RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CCDC39Q9UFE4 941 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 EBF1Q9UH73 591 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ZMYM5Q9UJ78 669 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 CIZ1Q9ULV3 898 aaPredicted RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 EXOC7Q9UPT5 735 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 PCDHB13Q9Y5F0 798 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 PCDHGA5Q9Y5G8 931 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 SRPRBQ9Y5M8 271 aaKnown RBP8.67□□□□□ -1.02
VIM-202ENST00000421459 CHD8Q9HCK8 2581 aa8.67□□□□□ -1.02
VIM-202ENST00000421459 ACACBO00763 2458 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 MYH11P35749 1972 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 FRMD3A2A2Y4 597 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 SOBPA7XYQ1 873 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 F8VP50 259 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 SGK1O00141 431 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 CDX4O14627 284 aaPredicted RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 RHOBTB1O94844 696 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 BMP15O95972 392 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 LDHAP00338 332 aaKnown RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 CYP17A1P05093 508 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 CHRM1P11229 460 aaPredicted RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 GAP43P17677 238 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 PCSK1P29120 753 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 ABCD1P33897 745 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 TIE1P35590 1138 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 MAGEA11P43364 429 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 DHPSP49366 369 aaPredicted RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 NOVA1P51513 510 aaKnown RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 SHC2P98077 582 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 KDSRQ06136 332 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 KCNB1Q14721 858 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 UAP1L1Q3KQV9 507 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 SH3PXD2AQ5TCZ1 1133 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 PMS2CLQ68D20 193 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 RHBDF2Q6PJF5 856 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 ADGRG2Q8IZP9 1017 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 GPD1LQ8N335 351 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 DEFB119Q8N690 84 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 ALLCQ8N6M5 410 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 TXNDC5Q8NBS9 432 aaKnown RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 PIGKQ92643 395 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 WBP2Q969T9 261 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 PCED1BQ96HM7 432 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 MMS19Q96T76 1030 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 FOXD4L1Q9NU39 408 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 TMEM74BQ9NUR3 256 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 TRPM5Q9NZQ8 1165 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 STK17AQ9UEE5 414 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 MBD1Q9UIS9 605 aaPredicted RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 ARHGAP26Q9UNA1 814 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.66□□□□□ -1.02
VIM-202ENST00000421459 CPQQ9Y646 472 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 USP24Q9UPU5 2620 aa8.66□□□□□ -1.02
VIM-202ENST00000421459 ATXN2Q99700 1313 aaKnown RBP8.65□□□□□ -1.02
VIM-202ENST00000421459 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 ZNF840PA6NDX5 716 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 TRIM24O15164 1050 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 CLIC2O15247 247 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 KLF8O95600 359 aaPredicted RBP8.65□□□□□ -1.02
VIM-202ENST00000421459 NFATC1O95644 943 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 WARSP23381 471 aaKnown RBP8.65□□□□□ -1.02
VIM-202ENST00000421459 CASP1P29466 404 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 STAT6P42226 847 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 PTGER3P43115 390 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 ZNF252P-AS1Q0IIN9 211 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 TAF10Q12962 218 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 MYO1EQ12965 1108 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 NR1H3Q13133 447 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 DHCR24Q15392 516 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 CRY1Q16526 586 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 USP39Q53GS9 565 aaKnown RBP8.65□□□□□ -1.02
VIM-202ENST00000421459 KIAA1211LQ6NV74 962 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 DENND5BQ6ZUT9 1274 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 HS2ST1Q7LGA3 356 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 TRAPPC11Q7Z392 1133 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 RASSF3Q86WH2 238 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 TMEFF1Q8IYR6 380 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 NAT16Q8N8M0 369 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 FSIP1Q8NA03 581 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 IL17RCQ8NAC3 791 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 DEFB124Q8NES8 71 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 MYCBPAPQ8TBZ2 947 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 ZNF516Q92618 1163 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 ACDQ96AP0 544 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 FUBP3Q96I24 572 aaKnown RBP eCLIP8.65□□□□□ -1.02
VIM-202ENST00000421459 ANKRD36BP1Q96IX9 119 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 SPATA17Q96L03 361 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 USP28Q96RU2 1077 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 FNBP1Q96RU3 617 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 B3GNT5Q9BYG0 378 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 ZNF518BQ9C0D4 1074 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 OLFML3Q9NRN5 406 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 HSPBP1Q9NZL4 362 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 CFAP97Q9P2B7 532 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 CHORDC1Q9UHD1 332 aaPredicted RBP8.65□□□□□ -1.02
VIM-202ENST00000421459 CDH9Q9ULB4 789 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 MMP17Q9ULZ9 603 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 WASF3Q9UPY6 502 aa8.65□□□□□ -1.02
VIM-202ENST00000421459 CACNA1BQ00975 2339 aa8.65□□□□□ -1.03
VIM-202ENST00000421459 SDK1Q7Z5N4 2213 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms