RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 ZSWIM2Q8NEG5 633 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 KAT5Q92993 513 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 MAGOHBQ96A72 148 aaKnown RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 FMO2Q99518 471 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 TCHPQ9BT92 498 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 FTHL17Q9BXU8 183 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 ZNF518BQ9C0D4 1074 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 CCDC113Q9H0I3 377 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 RC3H2Q9HBD1 1191 aaKnown RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PRMT7Q9NVM4 692 aaPredicted RBP13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 LRFN2Q9ULH4 789 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 CNTN6Q9UQ52 1028 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PCDHB4Q9Y5E5 795 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 PLXNA3P51805 1871 aa13.63□□□□□ -0.23
SMARCB1-203ENST00000407082 ACKR2O00590 384 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 OGTO15294 1046 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 TTI1O43156 1089 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 B4GALT5O43286 388 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 THAP12O43422 761 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 TSPAN1O60635 241 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CYP1A1P04798 512 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CLTAP09496 248 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 ATF7P17544 494 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 AXLP30530 894 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 NBL1P41271 181 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 GYS2P54840 703 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CAV1Q03135 178 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CENPCQ03188 943 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 C1QBPQ07021 282 aaKnown RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 SLMAPQ14BN4 828 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 AMHR2Q16671 573 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 FAM187BQ17R55 369 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 DUOXA2Q1HG44 320 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 TMEM132AQ24JP5 1023 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 DUPD1Q68J44 220 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 LLGL2Q6P1M3 1020 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 FAM43BQ6ZT52 329 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 HOOK3Q86VS8 718 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 DNAAF5Q86Y56 855 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 PALB2Q86YC2 1186 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 SLC13A5Q86YT5 568 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CMTR2Q8IYT2 770 aaKnown RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 C12orf50Q8NA57 414 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 ZNF516Q92618 1163 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CD101Q93033 1021 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 ATP6V1G3Q96LB4 118 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 TARS2Q9BW92 718 aaKnown RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 STMN4Q9H169 189 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 MFSD1Q9H3U5 465 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CHST12Q9NRB3 414 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 TOPORSQ9NS56 1045 aaPredicted RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 PIN4Q9Y237 131 aaKnown RBP13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 PLAAQ9Y263 795 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 CEP83Q9Y592 693 aa13.62□□□□□ -0.23
SMARCB1-203ENST00000407082 ESYT3A0FGR9 886 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 DAPK3O43293 454 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 PSTPIP1O43586 416 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 MGEA5O60502 916 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 IL18RAPO95256 599 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 LSM8O95777 96 aaKnown RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 TNNC2P02585 160 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 CALB1P05937 261 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 FAM153BP0C7A2 387 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 STAG3L1P0CL83 205 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 SRGAP2BP0DMP2 458 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ITGA4P13612 1032 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ARF4P18085 180 aaPredicted RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 GNA15P30679 374 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 HOXA11P31270 313 aaPredicted RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 HSD17B3P37058 310 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ACOT2P49753 483 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 GATMP50440 423 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 MRPS25P82663 173 aaKnown RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 LMNB2Q03252 620 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 TRPC3Q13507 836 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 NCOA4Q13772 614 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 FAM153CQ494X1 144 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 TDRD10Q5VZ19 366 aaKnown RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 KDM7AQ6ZMT4 941 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 SPATS2Q86XZ4 545 aaKnown RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 PHF13Q86YI8 300 aaPredicted RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 JAMLQ86YT9 394 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 NPAS4Q8IUM7 802 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 CCDC105Q8IYK2 499 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 TMEM105Q8N8V8 129 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 BBOF1Q8ND07 529 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 UBLCP1Q8WVY7 318 aaPredicted RBP13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ANKRD36BP1Q96IX9 119 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 CPB2Q96IY4 423 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ADAM2Q99965 735 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 HINFPQ9BQA5 517 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 FAM153AQ9UHL3 310 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 ANAPC7Q9UJX3 599 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 PCDHB12Q9Y5F1 795 aa13.61□□□□□ -0.23
SMARCB1-203ENST00000407082 A0A1B0GUA9 196 aa13.6□□□□□ -0.23
SMARCB1-203ENST00000407082 TTLL13PA6NNM8 815 aa13.6□□□□□ -0.23
SMARCB1-203ENST00000407082 FSCN2O14926 492 aa13.6□□□□□ -0.23
SMARCB1-203ENST00000407082 PPFIA2O75334 1257 aa13.6□□□□□ -0.23
SMARCB1-203ENST00000407082 COILP38432 576 aaPredicted RBP13.6□□□□□ -0.23
SMARCB1-203ENST00000407082 TTC3P53804 2025 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms