RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 LUC7L3O95232 432 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ATP5BP06576 529 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CBWD6Q4V339 395 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 TAF1BQ53T94 588 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CBWD3Q5JTY5 395 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CBWD5Q5RIA9 395 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PPIL6Q8IXY8 311 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 WDCPQ9H6R7 721 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 UXTQ9UBK9 157 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RSPH14Q9UHP6 348 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 SLC24A2Q9UI40 661 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 NEU2Q9Y3R4 380 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 NPR3P17342 541 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PMS2P54278 862 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 DEUP1Q05D60 604 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 GPS1Q13098 491 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 BEND6Q5SZJ8 279 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CDCA2Q69YH5 1023 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SLC47A2Q86VL8 602 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CCDC13Q8IYE1 715 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TOP6BLQ8N6T0 577 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 LRRC37BQ96QE4 947 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TSPAN16Q9UKR8 245 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TRPV2Q9Y5S1 764 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 HACD1B0YJ81 288 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TIMM44O43615 452 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ZWINTO95229 277 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 NCAM1P13591 858 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 IBSPP21815 317 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ARSEP51690 589 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ZNF143P52747 638 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ZNF33AQ06730 810 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 COL9A3Q14050 684 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 DRICH1Q6PGQ1 229 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ZNF572Q7Z3I7 529 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MFN1Q8IWA4 741 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ADGRF2Q8IZF7 708 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 FAM9CQ8IZT9 166 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ANKRD52Q8NB46 1076 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CCDC197Q8NCU1 140 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PPFIBP2Q8ND30 876 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CCT6BQ92526 530 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MCUR1Q96AQ8 359 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PRKD2Q9BZL6 878 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ACTR5Q9H9F9 607 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 VPS45Q9NRW7 570 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 FNIP2Q9P278 1114 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TRHDEQ9UKU6 1024 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MMP3P08254 477 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CCR1P32246 355 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 GRB14Q14449 540 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CLEC16AQ2KHT3 1053 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PPP1R15BQ5SWA1 713 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 LMNTD2Q8IXW0 634 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PGM2Q96G03 612 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 VCX3BQ9H321 246 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 POPDC2Q9HBU9 364 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TXLNGQ9NUQ3 528 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TPX2Q9ULW0 747 aaKnown RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TRPM7Q96QT4 1865 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 KCNA3P22001 575 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PMLP29590 882 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SLC8A1P32418 973 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CA8P35219 290 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 THPOP40225 353 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SERPINB4P48594 390 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 HGSNATQ68CP4 663 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MREGQ8N565 214 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 UPF1Q92900 1129 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CST8O60676 142 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 RECQL4O94761 1208 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TSHRP16473 764 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 VPS41P49754 854 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PSEN2P49810 448 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PLD1Q13393 1074 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 XRCC4Q13426 336 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MFSD10Q14728 455 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TCEAL1Q15170 157 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 C1orf228Q6PIY5 440 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PHLDB2Q86SQ0 1253 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PRUNE1Q86TP1 453 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SLCO2A1Q92959 643 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 TMEM106CQ9BVX2 250 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 HSD3B7Q9H2F3 369 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SNTG2Q9NY99 539 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 RBPJLQ9UBG7 517 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CDH9Q9ULB4 789 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 USP20Q9Y2K6 914 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 PCDHB7Q9Y5E2 793 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 NPHP3-ACAD11A0A0J9YXS1 232 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 ERICH4A6NGS2 130 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 LRRIQ3A6PVS8 624 aaPredicted RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 DDX3XO00571 662 aaKnown RBP eCLIP3.53□□□□□ -1.847e-16■■■■■ 39.8
VPS13C-203ENST00000395896 TRIM66O15016 1216 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 MDM4O15151 490 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 DDX5P17844 614 aaKnown RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 CES1P23141 567 aa3.53□□□□□ -1.84
VPS13C-203ENST00000395896 SFSWAPQ12872 951 aaKnown RBP3.53□□□□□ -1.84
VPS13C-203ENST00000395896 GRIK3Q13003 919 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms