RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 MFN1Q8IWA4 741 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PANX3Q96QZ0 392 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 ZNF184Q99676 751 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 CPSF2Q9P2I0 782 aaKnown RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 COL2A1P02458 1487 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TCRBV5S1A1TA0A578 114 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 KBTBD13C9JR72 458 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 HIRAP54198 1017 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 IZUMO2Q6UXV1 221 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 SH2D5Q6ZV89 423 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TMEM130Q8N3G9 435 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 WDTC1Q8N5D0 677 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 SAMD3Q8N6K7 520 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 EMC1Q8N766 993 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 JOSD2Q8TAC2 188 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 FGD4Q96M96 766 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TUBGCP5Q96RT8 1024 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 NTPCRQ9BSD7 190 aaKnown RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 SSU72Q9NP77 194 aaKnown RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PPM1HQ9ULR3 514 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 MEI4A8MW99 385 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 MAP3K7O43318 606 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PHBP35232 272 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 RFC1P35251 1148 aaPredicted RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 LRRC36Q1X8D7 754 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TMEM143Q96AN5 459 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TRIM4Q9C037 500 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 C20orf27Q9GZN8 174 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 TBC1D22BQ9NU19 505 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PPARGC1AQ9UBK2 798 aaKnown RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 PCSK1NQ9UHG2 260 aa19.31■□□□□ 0.68
CCDC3-201ENST00000378825 AGO2Q9UKV8 859 aaKnown RBP19.31■□□□□ 0.68
CCDC3-201ENST00000378825 DOCK5Q9H7D0 1870 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 EXTL3O43909 919 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 UGT1A9O60656 530 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 DNAJC6O75061 913 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 BAG2O95816 211 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 ASNSP08243 561 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 PSMD6Q15008 389 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 SWSAP1Q6NVH7 229 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 NPNTQ6UXI9 565 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 RIPOR1Q6ZS17 1223 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 VCPIP1Q96JH7 1222 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 ACAP3Q96P50 834 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 THTPAQ9BU02 230 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 POLR3FQ9H1D9 316 aaPredicted RBP19.3■□□□□ 0.68
CCDC3-201ENST00000378825 UGT1A7Q9HAW7 530 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 UGT1A10Q9HAW8 530 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 UGT1A8Q9HAW9 530 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 RBAKQ9NYW8 714 aaPredicted RBP19.3■□□□□ 0.68
CCDC3-201ENST00000378825 SEPT9Q9UHD8 586 aaPredicted RBP19.3■□□□□ 0.68
CCDC3-201ENST00000378825 MTO1Q9Y2Z2 717 aaKnown RBP19.3■□□□□ 0.68
CCDC3-201ENST00000378825 CXCL9Q07325 125 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 ARID3BQ8IVW6 561 aaPredicted RBP19.3■□□□□ 0.68
CCDC3-201ENST00000378825 TFAP2BQ92481 460 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 ANKEF1Q9NU02 776 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 STK32BQ9NY57 414 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 CNTN3Q9P232 1028 aa19.3■□□□□ 0.68
CCDC3-201ENST00000378825 TTLL13PA6NNM8 815 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 CXorf49A8MYA2 514 aaPredicted RBP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 HNRNPCL1O60812 293 aaKnown RBP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 SORBS2O94875 1100 aaKnown RBP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 STBD1O95210 358 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 GARTP22102 1010 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 YWHAGP61981 247 aaKnown RBP eCLIP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 MCL1Q07820 350 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 SCARA5Q6ZMJ2 495 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 RSAD2Q8WXG1 361 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 WNK4Q96J92 1243 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 RMDN3Q96TC7 470 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 SLC13A1Q9BZW2 595 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 MAP3K6O95382 1288 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 LYNP07948 512 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 ETS2P15036 469 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 CLDN10P78369 228 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 BMPR2Q13873 1038 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 KLHL38Q2WGJ6 581 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 ARMC3Q5W041 872 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 GPAT2Q6NUI2 795 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 TRIM72Q6ZMU5 477 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 ZCCHC23Q6ZST2 131 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 PPFIBP2Q8ND30 876 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 APOPT1Q96IL0 206 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 SRPK1Q96SB4 655 aaKnown RBP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 TARS2Q9BW92 718 aaKnown RBP19.29■□□□□ 0.68
CCDC3-201ENST00000378825 STRIP2Q9ULQ0 834 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 FZD1Q9UP38 647 aa19.29■□□□□ 0.68
CCDC3-201ENST00000378825 RTN3O95197 1032 aaPredicted RBP19.28■□□□□ 0.68
CCDC3-201ENST00000378825 WEE2P0C1S8 567 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 ANPEPP15144 967 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 RPS6KA3P51812 740 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 BST1Q10588 318 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 ORC1Q13415 861 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 MTERF2Q49AM1 385 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 RAB6CQ53S08 254 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 FAXCQ5TGI0 409 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 CIAPIN1Q6FI81 312 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 MTHFD1LQ6UB35 978 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 RTKN2Q8IZC4 609 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms