RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PLA1AQ53H76 456 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 AWAT1Q58HT5 328 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ODR4Q5SWX8 454 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SLC9A4Q6AI14 798 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SWSAP1Q6NVH7 229 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 PARS2Q7L3T8 475 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 DAAM2Q86T65 1068 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 CAND1Q86VP6 1230 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ZBTB9Q96C00 473 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 TAAR9Q96RI9 348 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 MESP1Q9BRJ9 268 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 GBA2Q9HCG7 927 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SHOC2Q9UQ13 582 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SMIM35A0A1B0GVV1 85 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 BTN3A1O00481 513 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 PRPF3O43395 683 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 MARCH6O60337 910 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 KCNA3P22001 575 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 HOXA4Q00056 320 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 RNASE12Q5GAN4 147 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ZDHHC24Q6UX98 284 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 TRIM72Q6ZMU5 477 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 EPM2AIP1Q7L775 607 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 WDR53Q7Z5U6 358 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 KCTD20Q7Z5Y7 419 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ABRAQ8N0Z2 381 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SLC35G2Q8TBE7 412 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 OSCP1Q8WVF1 389 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 SOCS4Q8WXH5 440 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 JDP2Q8WYK2 163 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ZNF48Q96MX3 618 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 PRR25Q96S07 402 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 TRIM54Q9BYV2 358 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 MS4A7Q9GZW8 240 aaPredicted RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ATP6V0A4Q9HBG4 840 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 NRIP3Q9NQ35 241 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 CNNM1Q9NRU3 951 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 PIH1D1Q9NWS0 290 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 NOB1Q9ULX3 412 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 BTBD3Q9Y2F9 522 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 THRAP3Q9Y2W1 955 aaKnown RBP2.77□□□□□ -1.97
VPS13A-206ENST00000376646 ZNF521Q96K83 1311 aa2.77□□□□□ -1.97
VPS13A-206ENST00000376646 A0A087WWL8 130 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 PARNO95453 639 aaKnown RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 PDE6CP51160 858 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 DGKEP52429 567 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ARFIP2P53365 341 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 PRKAG1P54619 331 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 TPTEP56180 551 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 PSG6Q00889 435 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 KIAA1614Q5VZ46 1190 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 C11orf87Q6NUJ2 197 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 CATSPERGQ6ZRH7 1159 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 OVCH2Q7RTZ1 564 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ZNF804AQ7Z570 1209 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 BPIFB1Q8TDL5 484 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 MAML1Q92585 1016 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 RPL36ALQ969Q0 106 aaKnown RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 PPP2R3CQ969Q6 453 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ASB2Q96Q27 587 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 C17orf80Q9BSJ5 609 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 DPCDQ9BVM2 203 aaPredicted RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 B3GNT5Q9BYG0 378 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 CIPCQ9C0C6 399 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 BHMT2Q9H2M3 363 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 NMRK2Q9NPI5 230 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ZIM2Q9NZV7 527 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 SH2B3Q9UQQ2 575 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 FER1L4A9Z1Z3 1794 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 USP19O94966 1318 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 A0A1W2PPL8 197 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 H3BML4 177 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 TOP3BO95985 862 aaKnown RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 RENBPP51606 427 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ITGA8P53708 1063 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 SLC13A2Q13183 592 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 MLC1Q15049 377 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 LRRC41Q15345 812 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 LCE1AQ5T7P2 110 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 DCAF12L1Q5VU92 463 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 NPNTQ6UXI9 565 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ZNF783Q6ZMS7 281 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 IZUMO1Q8IYV9 350 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 Q8N9P0 234 aaPredicted RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 TERB1Q8NA31 727 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 C8orf58Q8NAV2 365 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ABHD11Q8NFV4 315 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 RP9Q8TA86 221 aaKnown RBP2.76□□□□□ -1.97
VPS13A-206ENST00000376646 MMS19Q96T76 1030 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 SMURF2Q9HAU4 748 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 STK32BQ9NY57 414 aa2.76□□□□□ -1.97
VPS13A-206ENST00000376646 ADAMTS3O15072 1205 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 TBX3O15119 743 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 TUBB4AP04350 444 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 VCAM1P19320 739 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 CERS1P27544 350 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 MGAT5BQ3V5L5 792 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 Q4G0T1 1027 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 MORN5Q5VZ52 161 aa2.75□□□□□ -1.97
VPS13A-206ENST00000376646 LMBRD2Q68DH5 695 aaPredicted RBP2.75□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms