RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 LAMA3Q16787 3333 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 DDX3YO15523 660 aaKnown RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 CAPN15O75808 1086 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 GJB5O95377 273 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 TCP1P17987 556 aaKnown RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 RABGGTBP53611 331 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 SLC8A3P57103 927 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 TUBB2AQ13885 445 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 MAPRE1Q15691 268 aaKnown RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 SPOUT1Q5T280 376 aaKnown RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 FAM102AQ5T9C2 384 aaPredicted RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 NLRC5Q86WI3 1866 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 SCUBE3Q8IX30 993 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 RNF168Q8IYW5 571 aaPredicted RBP19.6■□□□□ 0.73
CLN3-206ENST00000360019 SMARCD1Q96GM5 515 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 KCNK16Q96T55 309 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 TUBB2BQ9BVA1 445 aa19.6■□□□□ 0.73
CLN3-206ENST00000360019 BDNFP23560 247 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 HTRA4P83105 476 aaPredicted RBP19.59■□□□□ 0.73
CLN3-206ENST00000360019 CTXN3Q4LDR2 81 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 SLC39A12Q504Y0 691 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 ZNF280DQ6N043 979 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 SLC39A11Q8N1S5 342 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 EMC1Q8N766 993 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 CLEC4CQ8WTT0 213 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 ZNF558Q96NG5 402 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 CSNK1G1Q9HCP0 422 aa19.59■□□□□ 0.73
CLN3-206ENST00000360019 PTPRDP23468 1912 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 KCNK3O14649 394 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 SPOPO43791 374 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 LCP1P13796 627 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 ACADSBP45954 432 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 SNX16P57768 344 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 DAB2IPQ5VWQ8 1189 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 RSPO2Q6UXX9 243 aaPredicted RBP19.58■□□□□ 0.73
CLN3-206ENST00000360019 CREG2Q8IUH2 290 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 ZDHHC17Q8IUH5 632 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 LRRN4CLQ8ND94 238 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 KCTD13Q8WZ19 329 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 KRT35Q92764 455 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 CAPZA3Q96KX2 299 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 TTPALQ9BTX7 342 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 CARD6Q9BX69 1037 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 IP6K2Q9UHH9 426 aa19.58■□□□□ 0.73
CLN3-206ENST00000360019 TBC1D4O60343 1298 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 LAG3P18627 525 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 SLC1A1P43005 524 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 MARCKSL1P49006 195 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 SLC6A3Q01959 620 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 TAF5Q15542 800 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 WHAMMP3Q1A5X7 153 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 COLGALT1Q8NBJ5 622 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 HERVK_113Q902F9 699 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 KHSRPQ92945 711 aaKnown RBP eCLIP19.58■□□□□ 0.72
CLN3-206ENST00000360019 TMEM59LQ9UK28 342 aa19.58■□□□□ 0.72
CLN3-206ENST00000360019 OR6C75A6NL08 312 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 HHLA1C9JL84 531 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 MAN1A1P33908 653 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 ADIGQ0VDE8 80 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 DCAF12L1Q5VU92 463 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 TRNP1Q6NT89 227 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 C4orf50Q6ZRC1 276 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 GPRIN1Q7Z2K8 1008 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 SPATA2LQ8IUW3 424 aaPredicted RBP19.57■□□□□ 0.72
CLN3-206ENST00000360019 DCP1BQ8IZD4 617 aaKnown RBP19.57■□□□□ 0.72
CLN3-206ENST00000360019 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.57■□□□□ 0.72
CLN3-206ENST00000360019 FNIP1Q8TF40 1166 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 ALG3Q92685 438 aa19.57■□□□□ 0.72
CLN3-206ENST00000360019 MIF4GDA9UHW6 222 aaKnown RBP19.56■□□□□ 0.72
CLN3-206ENST00000360019 F8VP50 259 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 GRAP2O75791 330 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 LINC00271P0C7V0 271 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 CTNNA1P35221 906 aaKnown RBP19.56■□□□□ 0.72
CLN3-206ENST00000360019 FLT3P36888 993 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 NDUFV1P49821 464 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 RNASE9P60153 205 aaKnown RBP19.56■□□□□ 0.72
CLN3-206ENST00000360019 ADCY1Q08828 1119 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 USP41Q3LFD5 358 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 PRSS55Q6UWB4 352 aaPredicted RBP19.56■□□□□ 0.72
CLN3-206ENST00000360019 ANKS3Q6ZW76 656 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 NIPA2Q8N8Q9 360 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 ABHD8Q96I13 439 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 UBXN6Q9BZV1 441 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 LRRC4Q9HBW1 653 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 CHST7Q9NS84 486 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 EHD2Q9NZN4 543 aa19.56■□□□□ 0.72
CLN3-206ENST00000360019 PDE2AO00408 941 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 SLU7O95391 586 aaKnown RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 CTNNA2P26232 953 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 PEX5P50542 639 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 CFAP221Q4G0U5 840 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 RAB41Q5JT25 222 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 TMEM169Q96HH4 297 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 MS4A14Q96JA4 679 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 DMAP1Q9NPF5 467 aaPredicted RBP19.55■□□□□ 0.72
CLN3-206ENST00000360019 LCMT1Q9UIC8 334 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 USTQ9Y2C2 406 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 KIAA1671Q9BY89 1806 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 C2CD4BA6NLJ0 364 aa19.55■□□□□ 0.72
CLN3-206ENST00000360019 SOD2P04179 222 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms