RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 SCUBE3Q8IX30 993 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 RASGEF1CQ8N431 466 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 EMC1Q8N766 993 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 NIPA2Q8N8Q9 360 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 GOLGA1Q92805 767 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 MYLPFQ96A32 169 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 RPGRIP1Q96KN7 1286 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 GPR62Q9BZJ7 368 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 TMLHEQ9NVH6 421 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 SYN3O14994 580 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 PBX3P40426 434 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 ACADSBP45954 432 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 ZDHHC17Q8IUH5 632 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 ACTRT1Q8TDG2 376 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 TMEM30AQ9NV96 361 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 TMEM59LQ9UK28 342 aa24.4■■□□□ 1.5
SDF4-202ENST00000360001 NT5C1B-RDH14C9J2C7 533 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 F8VP50 259 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 AMHP03971 560 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 WDR5P61964 334 aaKnown RBP24.39■■□□□ 1.49
SDF4-202ENST00000360001 SLC6A3Q01959 620 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 PIGHQ14442 188 aaPredicted RBP24.39■■□□□ 1.49
SDF4-202ENST00000360001 TMEM173Q86WV6 379 aaPredicted RBP24.39■■□□□ 1.49
SDF4-202ENST00000360001 NOA1Q8NC60 698 aaKnown RBP24.39■■□□□ 1.49
SDF4-202ENST00000360001 UBXN4Q92575 508 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 SMOQ99835 787 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 CWH43Q9H720 699 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 USTQ9Y2C2 406 aa24.39■■□□□ 1.49
SDF4-202ENST00000360001 EFCAB14O75071 495 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 AP1G2O75843 785 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 CACNA2D1P54289 1103 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 MAP3K7CLP57077 242 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 TAS2R40P59535 323 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 RNASE9P60153 205 aaKnown RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 TSPY1Q01534 308 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 ITIH3Q06033 890 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 ZNF211Q13398 564 aaPredicted RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 TEX35Q5T0J7 233 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 TMCO2Q7Z6W1 182 aaPredicted RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 SPATA4Q8NEY3 305 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 KHSRPQ92945 711 aaKnown RBP eCLIP24.38■■□□□ 1.49
SDF4-202ENST00000360001 NLRC5Q86WI3 1866 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 LCP1P13796 627 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 TAF5Q15542 800 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 VARS2Q5ST30 1063 aaKnown RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 FAM171A1Q5VUB5 890 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 TRNP1Q6NT89 227 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 ZMIZ2Q8NF64 920 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 BCL7CQ8WUZ0 217 aaPredicted RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 KCTD13Q8WZ19 329 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 ZNF689Q96CS4 500 aaPredicted RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 SMARCD1Q96GM5 515 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 RNPC3Q96LT9 517 aaKnown RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 RC3H2Q9HBD1 1191 aaKnown RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 IL23AQ9NPF7 189 aa24.38■■□□□ 1.49
SDF4-202ENST00000360001 TTC7AQ9ULT0 858 aaPredicted RBP24.38■■□□□ 1.49
SDF4-202ENST00000360001 SF3B1O75533 1304 aaKnown RBP eCLIP24.38■■□□□ 1.491e-7■■■■■ 105.8
SDF4-202ENST00000360001 PTPRDP23468 1912 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 FGFR3P22607 806 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 PSMA2P25787 234 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 RWDD2BP57060 319 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 MAPRE1Q15691 268 aaKnown RBP24.37■■□□□ 1.49
SDF4-202ENST00000360001 FUT10Q6P4F1 479 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 CLEC4CQ8WTT0 213 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.37■■□□□ 1.491e-10■■□□□ 11.9
SDF4-202ENST00000360001 RHOBTB2Q9BYZ6 727 aa24.37■■□□□ 1.49
SDF4-202ENST00000360001 C2CD4BA6NLJ0 364 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 PGRMC1O00264 195 aaKnown RBP24.36■■□□□ 1.49
SDF4-202ENST00000360001 C2orf54Q08AI8 447 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 MRPL58Q14197 206 aaKnown RBP24.36■■□□□ 1.49
SDF4-202ENST00000360001 ELF2Q15723 593 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 CC2D1AQ6P1N0 951 aaPredicted RBP24.36■■□□□ 1.49
SDF4-202ENST00000360001 KCNK16Q96T55 309 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 CSNK1G1Q9HCP0 422 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 PSTPIP1O43586 416 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 GRAP2O75791 330 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 BAIAP3O94812 1187 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 PYGMP11217 842 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 TCF4P15884 667 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 FLT3P36888 993 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 SCNN1AP37088 669 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 ADIGQ0VDE8 80 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 AADACL2Q6P093 401 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 C16orf59Q7L2K0 433 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 RHOT1Q8IXI2 618 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 ZCWPW1Q9H0M4 648 aa24.36■■□□□ 1.49
SDF4-202ENST00000360001 DYNC1I1O14576 645 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 BDNFP23560 247 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 ZNF143P52747 638 aaPredicted RBP24.35■■□□□ 1.49
SDF4-202ENST00000360001 RABGGTBP53611 331 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 ELAVL2Q12926 359 aaKnown RBP24.35■■□□□ 1.49
SDF4-202ENST00000360001 FAM117BQ6P1L5 589 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 SLC26A9Q7LBE3 791 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 CEP57Q86XR8 500 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 ARFGAP1Q8N6T3 406 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 RXFP2Q8WXD0 754 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 B3GALT6Q96L58 329 aa24.35■■□□□ 1.49
SDF4-202ENST00000360001 RBM12Q9NTZ6 932 aaKnown RBP24.35■■□□□ 1.49
SDF4-202ENST00000360001 HHLA1C9JL84 531 aa24.34■■□□□ 1.49
SDF4-202ENST00000360001 OR4Q2P0C623 313 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms