RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 PYGMP11217 842 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 TARSP26639 723 aaKnown RBP10.62□□□□□ -0.71
SYNE1-203ENST00000354674 SLMAPQ14BN4 828 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 IRF2BP2Q7Z5L9 587 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 ARHGEF19Q8IW93 802 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CD302Q8IX05 232 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 HELQQ8TDG4 1101 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 SRPK1Q96SB4 655 aaKnown RBP10.62□□□□□ -0.71
SYNE1-203ENST00000354674 RNF208Q9H0X6 261 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CHST12Q9NRB3 414 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 DDX18Q9NVP1 670 aaKnown RBP10.62□□□□□ -0.71
SYNE1-203ENST00000354674 ARHGAP20Q9P2F6 1191 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 DNAJC12Q9UKB3 198 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 LACTBL1A8MY62 500 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 TCP11X1B4DZS4 312 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 F8VZ95 297 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 GHRP10912 638 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 THPOP40225 353 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 PRKCIP41743 596 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CLCN2P51788 898 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 COPS2P61201 443 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 RIPK1Q13546 671 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 PKN2Q16513 984 aaKnown RBP10.62□□□□□ -0.71
SYNE1-203ENST00000354674 ASTE1Q2TB18 679 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-203ENST00000354674 FBXO47Q5MNV8 452 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 OR52E8Q6IFG1 317 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 FITM2Q8N6M3 262 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 CXorf38Q8TB03 319 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 ACAP3Q96P50 834 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 ATXN10Q9UBB4 475 aa10.62□□□□□ -0.71
SYNE1-203ENST00000354674 SSU72P8A0A1W2PR75 194 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CD4P01730 458 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 HLA-DRAP01903 254 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 GALK1P51570 392 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 PLOD1Q02809 727 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 GFPT1Q06210 699 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DUOXA2Q1HG44 320 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 XKR4Q5GH76 650 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 NT5DC4Q86YG4 428 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 HIC2Q96JB3 615 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TRAIPQ9BWF2 469 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TRPV6Q9H1D0 765 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ERVK-5Q9HDB9 667 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 HAO1Q9UJM8 370 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ST3GAL5Q9UNP4 418 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 PIN4Q9Y237 131 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DERAQ9Y315 318 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TRIM43BA6NCK2 446 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 LCA5LO95447 670 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 SERPING1P05155 500 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ATP6V1C1P21283 382 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 GBP1P32455 592 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 OSTNP61366 133 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 GCNT1Q02742 428 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DYNC1I2Q13409 638 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CNPY1Q3B7I2 92 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CFAP221Q4G0U5 840 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 KCTD21Q4G0X4 260 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF365Q70YC5 407 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 FAM126BQ8IXS8 530 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ZFAND2BQ8WV99 257 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 FAM84AQ96KN4 292 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 FAM81BQ96LP2 452 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 RMDN2Q96LZ7 410 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TLR10Q9BXR5 811 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 PDCD11Q14690 1871 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CFAP73A6NFT4 308 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 GPR182O15218 404 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CYP1A1P04798 512 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CKBP12277 381 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 SOX5P35711 763 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DRAP1Q14919 205 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 IFI16Q16666 785 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TSNAXIP1Q2TAA8 658 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 MAP7D1Q3KQU3 841 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 ZNF618Q5T7W0 954 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DUS1LQ6P1R4 473 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TEX9Q8N6V9 391 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 USP38Q8NB14 1042 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 SNX27Q96L92 541 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 KREMEN1Q96MU8 473 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TSPAN18Q96SJ8 248 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 AGO3Q9H9G7 860 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 DNAJC17Q9NVM6 304 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 TMA7Q9Y2S6 64 aaKnown RBP10.61□□□□□ -0.71
SYNE1-203ENST00000354674 PCDHA13Q9Y5I0 950 aa10.61□□□□□ -0.71
SYNE1-203ENST00000354674 CTSHP09668 335 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 CREB1P16220 341 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 EIF4A3P38919 411 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 STAT1P42224 750 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 DSC3Q14574 896 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 LPIN1Q14693 890 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 ZBTB6Q15916 424 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 TDRD12Q587J7 1177 aaKnown RBP10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SCARA3Q6AZY7 606 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 JADE1Q6IE81 842 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 ENOSF1Q7L5Y1 443 aa10.6□□□□□ -0.71
SYNE1-203ENST00000354674 SMG8Q8ND04 991 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms