RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TLR9Q9NR96 1032 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.72□□□□□ -0.85
USP4-202ENST00000351842 MED7O43513 233 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 RFX1P22670 979 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 PPM1AP35813 382 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 TKTL1P51854 596 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 RPL7AP62424 266 aaKnown RBP9.72□□□□□ -0.85
USP4-202ENST00000351842 HTRA4P83105 476 aaPredicted RBP9.72□□□□□ -0.85
USP4-202ENST00000351842 ZNF569Q5MCW4 686 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 WDTC1Q8N5D0 677 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 MYCBPAPQ8TBZ2 947 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 DDX1Q92499 740 aaKnown RBP9.72□□□□□ -0.85
USP4-202ENST00000351842 PPP1R13BQ96KQ4 1090 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 RC3H2Q9HBD1 1191 aaKnown RBP9.72□□□□□ -0.85
USP4-202ENST00000351842 TRPC7Q9HCX4 862 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 SALL4Q9UJQ4 1053 aa9.72□□□□□ -0.85
USP4-202ENST00000351842 WDFY4Q6ZS81 3184 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 M0QZQ0 153 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 CAPN9O14815 690 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 MDM4O15151 490 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 ERBB2P04626 1255 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 EPCAMP16422 314 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 CXCR5P32302 372 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 INCA1Q0VD86 236 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 ELAVL2Q12926 359 aaKnown RBP9.71□□□□□ -0.85
USP4-202ENST00000351842 NME3Q13232 169 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 PDCLQ13371 301 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 PLD1Q13393 1074 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 MEA1Q16626 185 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 CLEC20AQ6ZU45 233 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 RSRC2Q7L4I2 434 aaKnown RBP9.71□□□□□ -0.85
USP4-202ENST00000351842 MIB1Q86YT6 1006 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 TMEM86AQ8N2M4 240 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 SPPL3Q8TCT6 385 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 ULBP1Q9BZM6 244 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 NGRNQ9NPE2 291 aaKnown RBP9.71□□□□□ -0.85
USP4-202ENST00000351842 METTL5Q9NRN9 209 aaKnown RBP9.71□□□□□ -0.85
USP4-202ENST00000351842 KCND1Q9NSA2 647 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 CDH9Q9ULB4 789 aa9.71□□□□□ -0.85
USP4-202ENST00000351842 PMM2O15305 246 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 NCK2O43639 380 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 SEC24AO95486 1093 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 NPR3P17342 541 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 WARSP23381 471 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 ANXA13P27216 316 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 NOMO3P69849 1222 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 PAQR9Q6ZVX9 377 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 C18orf8Q96DM3 657 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 ZNF512Q96ME7 567 aaPredicted RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 NOX5Q96PH1 765 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 SMOQ99835 787 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 TMEM175Q9BSA9 504 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 C11orf84Q9BUA3 381 aaPredicted RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 NUP85Q9BW27 656 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 TLE6Q9H808 572 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 VRTNQ9H8Y1 702 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 SMPD4Q9NXE4 827 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 PCSK1NQ9UHG2 260 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 ANAPC7Q9UJX3 599 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 DSEQ9UL01 958 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 VWA8A3KMH1 1905 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 MTMR11A4FU01 709 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 GABRDO14764 452 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 TACC1O75410 805 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 TBX18O95935 607 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 USP46P62068 366 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 POU5F1Q01860 360 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 BMS1Q14692 1282 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 PTPN14Q15678 1187 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 RAB6CQ53S08 254 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 DNAJC24Q6P3W2 148 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 HFE2Q6ZVN8 426 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 ADAT2Q7Z6V5 191 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 DCP1BQ8IZD4 617 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 ACBD6Q9BR61 282 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 EDEM3Q9BZQ6 932 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 RAB6CQ9H0N0 254 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 ZNF576Q9H609 170 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 HCFC1R1Q9NWW0 138 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 PCDHB5Q9Y5E4 795 aa9.71□□□□□ -0.86
USP4-202ENST00000351842 BZW2Q9Y6E2 419 aaKnown RBP9.71□□□□□ -0.86
USP4-202ENST00000351842 VPS13AQ96RL7 3174 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 TGM5O43548 720 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 FGFR3P22607 806 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 PGFP49763 221 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 ZNF132P52740 706 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 NTHL1P78549 312 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 TWF1Q12792 350 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 CLEC16AQ2KHT3 1053 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SMTNL2Q2TAL5 461 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 DCAF6Q58WW2 860 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 LIN9Q5TKA1 542 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SYT10Q6XYQ8 523 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 DAAM2Q86T65 1068 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 ING5Q8WYH8 240 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SELENOOQ9BVL4 669 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 DNAI1Q9UI46 699 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 SOX1O00570 391 aaPredicted RBP9.7□□□□□ -0.86
USP4-202ENST00000351842 SYN3O14994 580 aa9.7□□□□□ -0.86
USP4-202ENST00000351842 MOCS2O96007 188 aaPredicted RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms