RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 ELF3P78545 371 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 LAMC2Q13753 1193 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 SPARCL1Q14515 664 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 TMEM132DQ14C87 1099 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 ILDR2Q71H61 639 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 ARMCX2Q7L311 632 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 RFX6Q8HWS3 928 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 ADPGKQ9BRR6 497 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 C10orf88Q9H8K7 445 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 SSU72Q9NP77 194 aaKnown RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 RABGEF1Q9UJ41 708 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 ITGA11Q9UKX5 1188 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 BARX2Q9UMQ3 279 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 AGAP1Q9UPQ3 857 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 COL1A2P08123 1366 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 GOLGA8MH3BSY2 632 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 SPAG7O75391 227 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 GEMIN4P57678 1058 aaKnown RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 GAD2Q05329 585 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 BNIP1Q12981 228 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 TAF5Q15542 800 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 FAM102AQ5T9C2 384 aaPredicted RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 WDR78Q5VTH9 848 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 TTC39CQ8N584 583 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 WDR83Q9BRX9 315 aaKnown RBP23.18■■□□□ 1.3
UPF3A-201ENST00000351487 DHRS4Q9BTZ2 278 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 KIF9Q9HAQ2 790 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 RXFP1Q9HBX9 757 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 C2CD2Q9Y426 696 aa23.18■■□□□ 1.3
UPF3A-201ENST00000351487 MCF2LO15068 1137 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 BANF1O75531 89 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 CSDE1O75534 798 aaKnown RBP23.17■■□□□ 1.3
UPF3A-201ENST00000351487 EIF3EP60228 445 aaKnown RBP23.17■■□□□ 1.3
UPF3A-201ENST00000351487 NCALDP61601 193 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 MSS51Q4VC12 460 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 FNBP1LQ5T0N5 605 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 CAPN12Q6ZSI9 719 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 MOB2Q70IA6 237 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 ANKMY2Q8IV38 441 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 UNC45BQ8IWX7 931 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 MAGEC3Q8TD91 643 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 PYROXD1Q8WU10 500 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 CPB2Q96IY4 423 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 PEBP4Q96S96 227 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 CNPY3Q9BT09 278 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 VGLL3A8MV65 326 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 TYROBPO43914 113 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 TMEM63AO94886 807 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 TSHRP16473 764 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 ZC3H12AQ5D1E8 599 aaKnown RBP23.17■■□□□ 1.3
UPF3A-201ENST00000351487 CYP4V2Q6ZWL3 525 aaPredicted RBP23.17■■□□□ 1.3
UPF3A-201ENST00000351487 NT5DC4Q86YG4 428 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 HSPH1Q92598 858 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 HEXIM2Q96MH2 286 aaKnown RBP23.17■■□□□ 1.3
UPF3A-201ENST00000351487 PITPNM3Q9BZ71 974 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 MIS12Q9H081 205 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 ACSS3Q9H6R3 686 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 KLHL14Q9P2G3 628 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 STARD13Q9Y3M8 1113 aa23.17■■□□□ 1.3
UPF3A-201ENST00000351487 C2CD4BA6NLJ0 364 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 GPD1P21695 349 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 MAP1SQ66K74 1059 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-201ENST00000351487 LCLAT1Q6UWP7 414 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 OPTNQ96CV9 577 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 CDCA5Q96FF9 252 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 KIAA1257Q9ULG3 409 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 AKT3Q9Y243 479 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 RALGAPA2Q2PPJ7 1873 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-201ENST00000351487 RBP3P10745 1247 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 GTF2A1P52655 376 aaPredicted RBP23.16■■□□□ 1.3
UPF3A-201ENST00000351487 NDST1P52848 882 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 CCDC15Q0P6D6 951 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 NOMO1Q15155 1222 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 PDK4Q16654 411 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 KLHL38Q2WGJ6 581 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 FITM2Q8N6M3 262 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 SPATA18Q8TC71 538 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 RMDN2Q96LZ7 410 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 CALN1Q9BXU9 219 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 UTRNP46939 3433 aa23.16■■□□□ 1.3
UPF3A-201ENST00000351487 CYP3A5P20815 502 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 SSTR1P30872 391 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 RBP5P82980 135 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 PDE4CQ08493 712 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 TRNP1Q6NT89 227 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 TAPT1Q6NXT6 567 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 ADGRD1Q6QNK2 874 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 C4orf33Q8N1A6 199 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 FAM71DQ8N9W8 422 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 PPTC7Q8NI37 304 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 GGT7Q9UJ14 662 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 PLXNB2O15031 1838 aa23.15■■□□□ 1.3
UPF3A-201ENST00000351487 STIP1P31948 543 aaKnown RBP23.14■■□□□ 1.3
UPF3A-201ENST00000351487 RPA3P35244 121 aaPredicted RBP23.14■■□□□ 1.3
UPF3A-201ENST00000351487 MGAT5Q09328 741 aa23.14■■□□□ 1.3
UPF3A-201ENST00000351487 FAM228AQ86W67 206 aa23.14■■□□□ 1.3
UPF3A-201ENST00000351487 PDIK1LQ8N165 341 aa23.14■■□□□ 1.3
UPF3A-201ENST00000351487 FBXO36Q8NEA4 188 aa23.14■■□□□ 1.3
UPF3A-201ENST00000351487 UBA3Q8TBC4 463 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms