RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MARCKSL1P49006 195 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 LILRA4P59901 499 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ZNF211Q13398 564 aaPredicted RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 XRCC4Q13426 336 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 DSC3Q14574 896 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 DPH6Q7L8W6 267 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 PARP9Q8IXQ6 854 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 SLC43A3Q8NBI5 491 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 OR6B3Q8NGW1 331 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 PGM2Q96G03 612 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 AP1M1Q9BXS5 423 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 SEZ6LQ9BYH1 1024 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 SYNCQ9H7C4 482 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 A0A1W2PQ45 241 aaPredicted RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 A0A1W2PQY0 241 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 SIGLEC16A6NMB1 481 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 HUS1O60921 280 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 NUDT17P0C025 328 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 GNL1P36915 607 aaPredicted RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 LMNB2Q03252 620 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ITIH4Q14624 930 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 UAP1Q16222 522 aaPredicted RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 PTPN20Q4JDL3 420 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ANKRD20A8PQ5CZ79 823 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 PPP1R15BQ5SWA1 713 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ZNF618Q5T7W0 954 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 CYP4A22Q5TCH4 519 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 LIMS2Q7Z4I7 341 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ACOT1Q86TX2 421 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 TLCD1Q96CP7 247 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 PGBD4Q96DM1 585 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 CHMP6Q96FZ7 201 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 ZFP42Q96MM3 310 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 GAD1Q99259 594 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 FMO2Q99518 471 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 NSRP1Q9H0G5 558 aaKnown RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 SNX25Q9H3E2 840 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 GOLGA2P5Q9HBQ8 144 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 STARD7Q9NQZ5 370 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 CYTH4Q9UIA0 394 aa13.48□□□□□ -0.25
CLK3-201ENST00000345005 NOVA2Q9UNW9 492 aaKnown RBP13.48□□□□□ -0.25
CLK3-201ENST00000345005 A0A0U1RQF3 1178 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 ARL5CA6NH57 179 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 A8MXQ7 604 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 KBTBD13C9JR72 458 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 SPTLC1O15269 473 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 PSTPIP1O43586 416 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 SETSIPP0DME0 302 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 PYGMP11217 842 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 PSMC1P62191 440 aaKnown RBP13.47□□□□□ -0.25
CLK3-201ENST00000345005 RPL7AP62424 266 aaKnown RBP13.47□□□□□ -0.25
CLK3-201ENST00000345005 DHX9Q08211 1270 aaKnown RBP13.47□□□□□ -0.25
CLK3-201ENST00000345005 PIGHQ14442 188 aaPredicted RBP13.47□□□□□ -0.25
CLK3-201ENST00000345005 KRT71Q3SY84 523 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 C6orf118Q5T5N4 469 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 AGMOQ6ZNB7 445 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CPNE8Q86YQ8 564 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 RHOT1Q8IXI2 618 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CRYBG2Q8N1P7 616 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 TOP6BLQ8N6T0 577 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CCDC197Q8NCU1 140 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 GSTCDQ8NEC7 633 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 UBA3Q8TBC4 463 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CCHCR1Q8TD31 782 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 RAPGEF5Q92565 580 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 MCEEQ96PE7 176 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CPXM1Q96SM3 734 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 TSPYL2Q9H2G4 693 aaPredicted RBP13.47□□□□□ -0.25
CLK3-201ENST00000345005 UBN1Q9NPG3 1134 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 HESX1Q9UBX0 185 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 TSPAN16Q9UKR8 245 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 PHF24Q9UPV7 400 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 TRIM17Q9Y577 477 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 PTCH2Q9Y6C5 1203 aa13.47□□□□□ -0.25
CLK3-201ENST00000345005 CENPFP49454 3210 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 DNAH12Q6ZR08 3092 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 CFAP73A6NFT4 308 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 MEIS3P2A8K0S8 358 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 ARVCFO00192 962 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 PODXLO00592 558 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 KRT3P12035 628 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 CKBP12277 381 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 WARSP23381 471 aaKnown RBP13.46□□□□□ -0.25
CLK3-201ENST00000345005 RPL9P32969 192 aaKnown RBP13.46□□□□□ -0.25
CLK3-201ENST00000345005 MLH1P40692 756 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 SNX16P57768 344 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 SLMAPQ14BN4 828 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 GOLGA7BQ2TAP0 167 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 ERMARDQ5T6L9 678 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 PPP1R26Q5T8A7 1209 aaPredicted RBP13.46□□□□□ -0.25
CLK3-201ENST00000345005 ARHGAP17Q68EM7 881 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 XYLT1Q86Y38 959 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 FUKQ8N0W3 1084 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 C12orf29Q8N999 325 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 LPPQ93052 612 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 ADAM2Q99965 735 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 PLCD4Q9BRC7 762 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 TMEM109Q9BVC6 243 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 OSBPL7Q9BZF2 842 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms