RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 FBXO47Q5MNV8 452 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 WSCD1Q658N2 575 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 C3orf20Q8ND61 904 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 TBC1D31Q96DN5 1066 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 TMEM176AQ96HP8 235 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 UNC93B1Q9H1C4 597 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 FAM114A2Q9NRY5 505 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 FAM105AQ9NUU6 356 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 TRPV2Q9Y5S1 764 aa13.73□□□□□ -0.21
COL18A1-201ENST00000342220 GMNCA6NCL1 334 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 F5H423 210 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PECAM1P16284 738 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 GNL1P36915 607 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 DDX1Q92499 740 aaKnown RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 YIPF3Q9GZM5 350 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 ASB7Q9H672 318 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 SAE1Q9UBE0 346 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 LCTP09848 1927 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 KBTBD13C9JR72 458 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 FGFR1P11362 822 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 KRT3P12035 628 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 NOMO3P69849 1222 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 DR1Q01658 176 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PPP1R7Q15435 360 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 DCAF4L1Q3SXM0 396 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PPP1R26Q5T8A7 1209 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 AGBL2Q5U5Z8 902 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 TRIM74Q86UV6 250 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 TRIM73Q86UV7 250 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 ABI1Q8IZP0 508 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 C18orf8Q96DM3 657 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 FMO2Q99518 471 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 GPATCH2LQ9NWQ4 482 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 GTF3C4Q9UKN8 822 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 TTC7AQ9ULT0 858 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 GOLGA6L10A0A0M3HER8 536 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 CYB561D2O14569 222 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 MICAL2O94851 1124 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PYGLP06737 847 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PROZP22891 400 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 GRM5P41594 1212 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 OR1G1P47890 313 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 CLCNKBP51801 687 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 IFFO1Q0D2I5 559 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PPP6R3Q5H9R7 873 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 HP1BP3Q5SSJ5 553 aaPredicted RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 CAPN12Q6ZSI9 719 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 PCSK9Q8NBP7 692 aaKnown RBP13.72□□□□□ -0.21
COL18A1-201ENST00000342220 APPL2Q8NEU8 664 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 CPXM1Q96SM3 734 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 SNX24Q9Y343 169 aa13.72□□□□□ -0.21
COL18A1-201ENST00000342220 KPNA7A9QM74 516 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 SPTLC1O15269 473 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 ZC3H11AO75152 810 aaKnown RBP eCLIP13.71□□□□□ -0.217e-16■□□□□ 8.1
COL18A1-201ENST00000342220 RASSF9O75901 435 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 RFC1P35251 1148 aaPredicted RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 AP3M2P53677 418 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 RAD23BP54727 409 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 YWHAEP62258 255 aaKnown RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 PTPN20Q4JDL3 420 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 SPOUT1Q5T280 376 aaKnown RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 JOSD2Q8TAC2 188 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 RAPGEF5Q92565 580 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 MRRFQ96E11 262 aaKnown RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 B3GALT6Q96L58 329 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 MIOSQ9NXC5 875 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 PPME1Q9Y570 386 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 COL1A2P08123 1366 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 E5RJQ4 531 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 TRAPPC3O43617 180 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 KRT1P04264 644 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 GJA9P57773 515 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 TMCO2Q7Z6W1 182 aaPredicted RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 MDM1Q8TC05 714 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 SLC2A14Q8TDB8 520 aa13.71□□□□□ -0.21
COL18A1-201ENST00000342220 UBQLN1Q9UMX0 589 aaKnown RBP13.71□□□□□ -0.21
COL18A1-201ENST00000342220 SHBGP04278 402 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 THP07101 528 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 C15orf59Q2T9L4 293 aaPredicted RBP13.71□□□□□ -0.22
COL18A1-201ENST00000342220 SH3PXD2AQ5TCZ1 1133 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 CYB5D1Q6P9G0 228 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.71□□□□□ -0.22
COL18A1-201ENST00000342220 PIWIL1Q96J94 861 aaKnown RBP13.71□□□□□ -0.22
COL18A1-201ENST00000342220 ERP44Q9BS26 406 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 RHOBTB2Q9BYZ6 727 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 RAB17Q9H0T7 212 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 CARD9Q9H257 536 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 TPX2Q9ULW0 747 aaKnown RBP13.71□□□□□ -0.22
COL18A1-201ENST00000342220 ATP11BQ9Y2G3 1177 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 DAAM1Q9Y4D1 1078 aa13.71□□□□□ -0.22
COL18A1-201ENST00000342220 PLTPP55058 493 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 ACCSLQ4AC99 568 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 DUPD1Q68J44 220 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 C6orf89Q6UWU4 347 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 YTHDF3Q7Z739 585 aaKnown RBP13.7□□□□□ -0.22
COL18A1-201ENST00000342220 HACE1Q8IYU2 909 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 KLHL23Q8NBE8 558 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 SLC4A11Q8NBS3 891 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 ADAM32Q8TC27 787 aa13.7□□□□□ -0.22
COL18A1-201ENST00000342220 PGLYRP2Q96PD5 576 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms