RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 E5RJQ4 531 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 KCNK1O00180 336 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 DNALI1O14645 258 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 ASAP2O43150 1006 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 PTPRAP18433 802 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 MSX2P35548 267 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 COG7P83436 770 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 DENND5BQ6ZUT9 1274 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 TMC2Q8TDI7 906 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 DCPSQ96C86 337 aaKnown RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 CLPTM1LQ96KA5 538 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 ZNF317Q96PQ6 595 aaPredicted RBP12.47□□□□□ -0.41
USP1-201ENST00000339950 SLC4A7Q9Y6M7 1214 aa12.47□□□□□ -0.41
USP1-201ENST00000339950 CITO14578 2027 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 GOLGA8CPA6NN73 597 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 LIASO43766 372 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 CYP2C8P10632 490 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 TAC1P20366 129 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 KCNA4P22459 653 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 RBL1P28749 1068 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 HSD17B4P51659 736 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 PREPLQ4J6C6 727 aaPredicted RBP12.46□□□□□ -0.41
USP1-201ENST00000339950 MAP7D3Q8IWC1 876 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 MORC4Q8TE76 937 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 ZNF75CPQ92670 426 aaPredicted RBP12.46□□□□□ -0.41
USP1-201ENST00000339950 ADAM7Q9H2U9 754 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 USP18Q9UMW8 372 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 MYPNQ86TC9 1320 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 GOLGA8QA0A0J9YX86 632 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 GOLGA8OA6NCC3 632 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 GOLGA8NF8WBI6 632 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 PGM1P36871 562 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 VCPP55072 806 aaKnown RBP12.46□□□□□ -0.41
USP1-201ENST00000339950 RPL10AP62906 217 aaKnown RBP12.46□□□□□ -0.41
USP1-201ENST00000339950 ZNF200P98182 395 aaPredicted RBP12.46□□□□□ -0.41
USP1-201ENST00000339950 GCNT1Q02742 428 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 NFIL3Q16649 462 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 C1orf146Q5VVC0 180 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 UNC5BQ8IZJ1 945 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 SMC1BQ8NDV3 1235 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 EXD1Q8NHP7 514 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 AFG3L2Q9Y4W6 797 aa12.46□□□□□ -0.41
USP1-201ENST00000339950 UGT1A9O60656 530 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 HMGCRP04035 888 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 KRT7P08729 469 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 GARTP22102 1010 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 PGGT1BP53609 377 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 NCKAP1LP55160 1127 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 GEMIN4P57678 1058 aaKnown RBP12.46□□□□□ -0.42
USP1-201ENST00000339950 ITKQ08881 620 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 PEX6Q13608 980 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 MSS51Q4VC12 460 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 CEP128Q6ZU80 1094 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 SPDYE1Q8NFV5 336 aaPredicted RBP12.46□□□□□ -0.42
USP1-201ENST00000339950 UGT1A7Q9HAW7 530 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 UGT1A10Q9HAW8 530 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 UGT1A8Q9HAW9 530 aa12.46□□□□□ -0.42
USP1-201ENST00000339950 IQANK1A0A1B0GTG1 560 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 CFAP73A6NFT4 308 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 NOVP48745 357 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 PTK6Q13882 451 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 ITIH4Q14624 930 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 GOLGA7BQ2TAP0 167 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 GRAMD1BQ3KR37 738 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 RWDD4Q6NW29 188 aaKnown RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 PID1Q7Z2X4 250 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 EIF1ADQ8N9N8 165 aaKnown RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 SLC26A7Q8TE54 656 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 CGRRF1Q99675 332 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 DLGAP2Q9P1A6 1054 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 OGTO15294 1046 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 TRPA1O75762 1119 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 LUC7L3O95232 432 aaKnown RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 STAG3L1P0CL83 205 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 TPH1P17752 444 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 GLRBP48167 497 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 NDST1P52848 882 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 LGSNQ5TDP6 509 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 FOXR2Q6PJQ5 311 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 MIEF2Q96C03 454 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 TBC1D10AQ9BXI6 508 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 LACTBL1A8MY62 500 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 AP1G2O75843 785 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 DCTN3O75935 186 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 CTSHP09668 335 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 IL1R2P27930 398 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 CAV1Q03135 178 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 DCAF6Q58WW2 860 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 RGS9BPQ6ZS82 235 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 OTOAQ7RTW8 1153 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 ALYREFQ86V81 257 aaKnown RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 RYBPQ8N488 228 aaPredicted RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 CCNYL1Q8N7R7 359 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 FAM172AQ8WUF8 416 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 GPRASP2Q96D09 838 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 MAGEB18Q96M61 343 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 ASNSD1Q9NWL6 643 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 KLHL8Q9P2G9 620 aaPredicted RBP12.45□□□□□ -0.42
USP1-201ENST00000339950 SPATA31A6Q5VVP1 1343 aa12.45□□□□□ -0.42
USP1-201ENST00000339950 MED7O43513 233 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms