RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 PDZD4Q76G19 769 aaPredicted RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 NUP93Q8N1F7 819 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 UBA3Q8TBC4 463 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 GPR152Q8TDT2 470 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 CPLX3Q8WVH0 158 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 SMOQ99835 787 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 GPR88Q9GZN0 384 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 WDR6Q9NNW5 1121 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 AVENQ9NQS1 362 aaPredicted RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 ASAH2Q9NR71 780 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 MAGED2Q9UNF1 606 aaPredicted RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 LUC7L2Q9Y383 392 aaKnown RBP12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 ITIH6Q6UXX5 1313 aa12.6□□□□□ -0.39
SPTLC1-202ENST00000337841 A0A1W2PQJ5 194 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 GRXCR2A6NFK2 248 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 MICAL2O94851 1124 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 RHOP08100 348 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 PNMA6AP0CW24 399 aaPredicted RBP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 SETSIPP0DME0 302 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 CYP11B1P15538 503 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 FSHRP23945 695 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 PDE6CP51160 858 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 TFF2Q03403 129 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 BST2Q10589 180 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 TRIM14Q14142 442 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 CBX2Q14781 532 aaPredicted RBP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 MEA1Q16626 185 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 TSR1Q2NL82 804 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 SFMBT2Q5VUG0 894 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 CLEC20AQ6ZU45 233 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 SLC47A2Q86VL8 602 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 ZNF677Q86XU0 584 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 VSTM4Q8IW00 320 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 HS6ST3Q8IZP7 471 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 SUSD6Q92537 303 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 FBXO44Q9H4M3 255 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 PNPLA8Q9NP80 782 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 HCFC1R1Q9NWW0 138 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 CAPN11Q9UMQ6 739 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 MRPS23Q9Y3D9 190 aaKnown RBP12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 CEP83Q9Y592 693 aa12.59□□□□□ -0.39
SPTLC1-202ENST00000337841 M0QYV0 167 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 XPO1O14980 1071 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 BEST1O76090 585 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 CALCAP01258 141 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 HMGA1P17096 107 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 YWHAQP27348 245 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 CDC25CP30307 473 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 PPP3CCP48454 512 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ZNF75DP51815 510 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 CACNA2D1P54289 1103 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 EPHA5P54756 1037 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 SNX16P57768 344 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ZBED6P86452 979 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ARID5AQ03989 594 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 PDE4CQ08493 712 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 SMAD2Q15796 467 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ASIC2Q16515 512 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 PIGZQ86VD9 579 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 TTC30AQ86WT1 665 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ZMIZ2Q8NF64 920 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 TRMT2BQ96GJ1 504 aaKnown RBP12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 MRFAP1L1Q96HT8 127 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 MYRFLQ96LU7 910 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 NOX5Q96PH1 765 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 GCNAQ96QF7 691 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ZSWIM1Q9BR11 485 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 LHX5Q9H2C1 402 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ATXN3LQ9H3M9 355 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 LRRC4Q9HBW1 653 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 ACP6Q9NPH0 428 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 PCDHGC3Q9UN70 934 aa12.58□□□□□ -0.4
SPTLC1-202ENST00000337841 LRRC53A6NM62 1247 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 TNFRSF10BO14763 440 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 AP5Z1O43299 807 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 GABRR2P28476 465 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 NTHL1P78549 312 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 MTMR3Q13615 1198 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 PKDCCQ504Y2 493 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 ARHGAP15Q53QZ3 475 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 DENND1BQ6P3S1 775 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 OTOP3Q7RTS5 596 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 TMEM35BQ8NCS4 154 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 PDZD8Q8NEN9 1154 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 STK32AQ8WU08 396 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 SLC35F5Q8WV83 523 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 KCTD13Q8WZ19 329 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 BAP1Q92560 729 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 SYN2Q92777 582 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 SECISBP2LQ93073 1101 aaKnown RBP12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 ACSF2Q96CM8 615 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 HSFY1Q96LI6 401 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 SLITRK1Q96PX8 696 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 ASB2Q96Q27 587 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 TTLL2Q9BWV7 592 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 PHF7Q9BWX1 381 aaPredicted RBP12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 LRRC3Q9BY71 257 aa12.57□□□□□ -0.4
SPTLC1-202ENST00000337841 TTYH3Q9C0H2 523 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms