RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 FAM49BQ9NUQ9 324 aa13.48□□□□□ -0.25
HMGCS1-201ENST00000325110 USP18Q9UMW8 372 aa13.48□□□□□ -0.25
HMGCS1-201ENST00000325110 ZWINTO95229 277 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 LAMTOR4Q0VGL1 99 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ATF7IP2Q5U623 682 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 WDR49Q8IV35 697 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ARID3BQ8IVW6 561 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 TMEM192Q8IY95 271 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 MAGEC3Q8TD91 643 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 FAM161BQ96MY7 647 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 PCMTD2Q9NV79 361 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 SLC24A2Q9UI40 661 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 AKT3Q9Y243 479 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 CLUHO75153 1309 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 SPATA31C2B4DYI2 1134 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 MYL2P10916 166 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 GCAP28676 217 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 YARSP54577 528 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 BCAR1P56945 870 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 PPP2R5DQ14738 602 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 MROH9Q5TGP6 573 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 PPP1R2P3Q6NXS1 205 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 TTC7BQ86TV6 843 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 NAF1Q96HR8 494 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 TMEM120AQ9BXJ8 343 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ASCC2Q9H1I8 757 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 DHX33Q9H6R0 707 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 HOXC10Q9NYD6 342 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 PRKAG3Q9UGI9 489 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ATAD5Q96QE3 1844 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 TCEA3O75764 348 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 CRYMQ14894 314 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 RCN1Q15293 331 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 OASLQ15646 514 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 EP400NLQ6ZTU2 488 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ANKRD31Q8N7Z5 1873 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 SEPT1Q8WYJ6 367 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 L3MBTL3Q96JM7 780 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ACAP3Q96P50 834 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 TRIM56Q9BRZ2 755 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 SHCBP1LQ9BZQ2 653 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 GREB1LQ9C091 1923 aaPredicted RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 SEPT10Q9P0V9 454 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 ZC3H7BQ9UGR2 993 aaKnown RBP13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 HMGXB4Q9UGU5 601 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 RABGEF1Q9UJ41 708 aa13.47□□□□□ -0.25
HMGCS1-201ENST00000325110 STBD1O95210 358 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ITGAVP06756 1048 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 RFWD3Q6PCD5 774 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 HIPK4Q8NE63 616 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 CCDC110Q8TBZ0 833 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 PTPRN2Q92932 1015 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 APOL6Q9BWW8 343 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 RNPEPL1Q9HAU8 725 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 PIM2Q9P1W9 311 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 CNTNAP2Q9UHC6 1331 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 H3BRJ5 948 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 FGFR1P11362 822 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ABCD1P33897 745 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ALDH18A1P54886 795 aaKnown RBP13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 RTP1P59025 263 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 RAB6CQ53S08 254 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ZCCHC23Q6ZST2 131 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ANKLE1Q8NAG6 615 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 PPFIBP2Q8ND30 876 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 UTP4Q969X6 686 aaKnown RBP13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 TEPSINQ96N21 525 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 RAB6CQ9H0N0 254 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 EBF2Q9HAK2 575 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 ASNSD1Q9NWL6 643 aa13.46□□□□□ -0.25
HMGCS1-201ENST00000325110 LY75O60449 1722 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 FAM237BA0A1B0GVD1 139 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 ARHGAP42A6NI28 874 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 LSM8O95777 96 aaKnown RBP13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 NFICP08651 508 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 DESP17661 470 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 EFNA5P52803 228 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 TAP1Q03518 808 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 COPS5Q92905 334 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 DENND2DQ9H6A0 471 aaPredicted RBP13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 ARL8BQ9NVJ2 186 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 DONSONQ9NYP3 566 aa13.46□□□□□ -0.26
HMGCS1-201ENST00000325110 TCRBV9S1A1TA0A576 114 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 ERBB2P04626 1255 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 DPYSL3Q14195 570 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 AMHR2Q16671 573 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 DEFB132Q7Z7B7 95 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 CLNKQ7Z7G1 428 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 WDTC1Q8N5D0 677 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 C10orf82Q8WW14 230 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 RXFP2Q8WXD0 754 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 CNKSR2Q8WXI2 1034 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 ATXN7L3BQ96GX2 97 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 PRR11Q96HE9 360 aaPredicted RBP13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 CPB2Q96IY4 423 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 SPATA33Q96N06 139 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 GGA3Q9NZ52 723 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 DRG1Q9Y295 367 aaKnown RBP13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 AFG3L2Q9Y4W6 797 aa13.45□□□□□ -0.26
HMGCS1-201ENST00000325110 PRPF4O43172 522 aaKnown RBP eCLIP13.45□□□□□ -0.267e-10■■■■□ 23.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms