RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ITGA3P26006 1051 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.18□□□□□ -1.1
CIITA-201ENST00000324288 SPATA18Q8TC71 538 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 RNFT2Q96EX2 444 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ISCUQ9H1K1 167 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SMARCAD1Q9H4L7 1026 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 KLHL20Q9Y2M5 609 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 STX7O15400 261 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 S100A9P06702 114 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 DNAAF5Q86Y56 855 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 RTL3Q8N8U3 475 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 USP13Q92995 863 aaPredicted RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 TRIM63Q969Q1 353 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 PSD3Q9NYI0 1048 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 MAP3K20Q9NYL2 800 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 RNF181Q9P0P0 153 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 PTGES3LE9PB15 166 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 TBC1D12O60347 775 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ATP6V1G2O95670 118 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 CYBBP04839 570 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 DCAF6Q58WW2 860 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ERAP2Q6P179 960 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 BLOC1S5Q8TDH9 187 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 KIAA1586Q9HCI6 787 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 A0A1B0GTH6 734 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 RAG1P15918 1043 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 NCF4Q15080 339 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 MGAT5BQ3V5L5 792 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ZNF57Q68EA5 555 aaPredicted RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 KLHL24Q6TFL4 600 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SEMA4DQ92854 862 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 C2orf40Q9H1Z8 148 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 RTN2O75298 545 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 CDH16O75309 829 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ALOX15P16050 662 aaPredicted RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 ST8SIA6P61647 398 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SLC29A2Q14542 456 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SUGP1Q8IWZ8 645 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 RTKN2Q8IZC4 609 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 UTP15Q8TED0 518 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 RUBCNQ92622 972 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 MASTLQ96GX5 879 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ABI2Q9NYB9 513 aaPredicted RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 ZNF222Q9UK12 451 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 ALDH1A1P00352 501 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 CYP19A1P11511 503 aaPredicted RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 SERPINB9P50453 376 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 POU4F1Q01851 419 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 NR1I3Q14994 352 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 KRT78Q8N1N4 520 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 FAM129AQ9BZQ8 928 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 BTBD7Q9P203 1132 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 IQCMA0A1B0GVH7 501 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 PSMD11O00231 422 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 TXNP10599 105 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 PDGFRAP16234 1089 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 GRK3P35626 688 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SOX6P35712 828 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 CASP5P51878 434 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 C10orf120Q5SQS8 335 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 RCSD1Q6JBY9 416 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 TDRD5Q8NAT2 981 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 MAGEB18Q96M61 343 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 DDX50Q9BQ39 737 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 RIBC2Q9H4K1 309 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 CPDO75976 1380 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 KCNJ6P48051 423 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 NUP107P57740 925 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 EZH2Q15910 746 aaKnown RBP8.18□□□□□ -1.1
CIITA-201ENST00000324288 ARMC3Q5W041 872 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SCFD2Q8WU76 684 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 TBC1D22BQ9NU19 505 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 HOXC10Q9NYD6 342 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 WWOXQ9NZC7 414 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 SLC25A13Q9UJS0 675 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 MROH7-TTC4A0A0A0MT08 1334 aa8.18□□□□□ -1.1
CIITA-201ENST00000324288 IDH3BO43837 385 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 KDM7AQ6ZMT4 941 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 ATG14Q6ZNE5 492 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 HAUS6Q7Z4H7 955 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 KIFC1Q9BW19 673 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 GPR108Q9NPR9 543 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 ENTPD7Q9NQZ7 604 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 KRT84Q9NSB2 600 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 MAP10Q9P2G4 905 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 MYMKA6NI61 221 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 CLASP2O75122 1294 aaKnown RBP8.17□□□□□ -1.1
CIITA-201ENST00000324288 ZNF37AP17032 561 aaPredicted RBP8.17□□□□□ -1.1
CIITA-201ENST00000324288 ZNF560Q96MR9 790 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 DUSP12Q9UNI6 340 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 C2CD2Q9Y426 696 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 EVPLLA8MZ36 301 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 TRIM72Q6ZMU5 477 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 IZUMO1Q8IYV9 350 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 TMEM237Q96Q45 408 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 SEPHS2Q99611 448 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 PCM1Q15154 2024 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 ZNF839A8K0R7 811 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 PLEKHF1Q96S99 279 aa8.17□□□□□ -1.1
CIITA-201ENST00000324288 MXD3Q9BW11 206 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms