RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 TMEM176AQ96HP8 235 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 RNF38Q9H0F5 515 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TRPC7Q9HCX4 862 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ABCB6Q9NP58 842 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 UBE2TQ9NPD8 197 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 OSER1Q9NX31 292 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ZNF638Q14966 1978 aaKnown RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 BECN2A8MW95 431 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 PES1O00541 588 aaKnown RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 EPHB6O15197 1021 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 STX10O60499 249 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 P4HA1P13674 534 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 BRD2P25440 801 aaKnown RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 SLC5A3P53794 718 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TNK2Q07912 1038 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TDGQ13569 410 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ARHGAP44Q17R89 818 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TCP11X2Q5H9J9 407 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 CDKAL1Q5VV42 579 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TRIM65Q6PJ69 517 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 TRIM67Q6ZTA4 783 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 DENND5BQ6ZUT9 1274 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ARL14EPQ8N8R7 260 aaPredicted RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 SPATA18Q8TC71 538 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ENOX1Q8TC92 643 aaKnown RBP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 WBP2Q969T9 261 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 FUBP3Q96I24 572 aaKnown RBP eCLIP12.78□□□□□ -0.36
SCFD1-201ENST00000311943 NT5C1BQ96P26 610 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 LRFN3Q9BTN0 628 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 THAP9Q9H5L6 903 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 CYP3A43Q9HB55 503 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 HSFX1Q9UBD0 423 aa12.78□□□□□ -0.36
SCFD1-201ENST00000311943 ANAPC1Q9H1A4 1944 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 PI15O43692 258 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 NOL4O94818 638 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 GNA14O95837 355 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 TBX18O95935 607 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 MAGEA11P43364 429 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 KRT31Q15323 416 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 STX1AQ16623 288 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 VWA3BQ502W6 1294 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 NAIF1Q69YI7 327 aaPredicted RBP12.77□□□□□ -0.37
SCFD1-201ENST00000311943 TRIM68Q6AZZ1 485 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 UNC93AQ86WB7 457 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 DHX40Q8IX18 779 aaKnown RBP12.77□□□□□ -0.37
SCFD1-201ENST00000311943 TNIP3Q96KP6 325 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 NDST4Q9H3R1 872 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 AVENQ9NQS1 362 aaPredicted RBP12.77□□□□□ -0.37
SCFD1-201ENST00000311943 MAFFQ9ULX9 164 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 PCDHB4Q9Y5E5 795 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 DENND4CQ5VZ89 1909 aa12.77□□□□□ -0.37
SCFD1-201ENST00000311943 ANTXRLA6NF34 631 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 OTOL1A6NHN0 477 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SHISA7A6NL88 538 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 HEPACAM2A8MVW5 462 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CD19P15391 556 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SOX9P48436 509 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 VCPP55072 806 aaKnown RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 RPL10AP62906 217 aaKnown RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SMARCB1Q12824 385 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 VSTM1Q6UX27 236 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 RTL10Q7L3V2 364 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 APTXQ7Z2E3 356 aaKnown RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 ITIH5Q86UX2 942 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CCDC150Q8NCX0 1101 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 HNRNPABQ99729 332 aaKnown RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 NMUR1Q9HB89 426 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SMPD4Q9NXE4 827 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 GMIPQ9P107 970 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 ZNF197O14709 1029 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 MDM4O15151 490 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CYP26A1O43174 497 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 FAM163BP0C2L3 166 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CSH1P0DML2 217 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CSH2P0DML3 217 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 MAPRE1Q15691 268 aaKnown RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 MAN2A1Q16706 1144 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 GOLGA7BQ2TAP0 167 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SIX5Q8N196 739 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 SMARCD2Q92925 531 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 USP13Q92995 863 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 C8orf48Q96LL4 319 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 MYRFLQ96LU7 910 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 CCSER2Q9H7U1 834 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 HEBP1Q9NRV9 189 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 ANO10Q9NW15 660 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 TJP2Q9UDY2 1190 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 TSPAN16Q9UKR8 245 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 DUSP12Q9UNI6 340 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 MTF2Q9Y483 593 aaPredicted RBP12.76□□□□□ -0.37
SCFD1-201ENST00000311943 ASB3Q9Y575 518 aa12.76□□□□□ -0.37
SCFD1-201ENST00000311943 TMEM221A6NGB7 291 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 M0R296 226 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 NPR3P17342 541 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 HOXC13P31276 330 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 RGS7P49802 495 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 PDE4CQ08493 712 aa12.75□□□□□ -0.37
SCFD1-201ENST00000311943 RBBP8NLQ8NC74 664 aaPredicted RBP12.75□□□□□ -0.37
SCFD1-201ENST00000311943 SMARCD1Q96GM5 515 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms