RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SLC37A4O43826 429 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 PTPN7P35236 360 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 DEFB107AQ8IZN7 70 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 SLC25A41Q8N5S1 370 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 DCUN1D1Q96GG9 259 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 NDUFB10O96000 172 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 RAD51Q06609 339 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 SPP2Q13103 211 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 MYLK2Q9H1R3 596 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 MOSPD1Q9UJG1 213 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 TNFAIP8O95379 198 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 TROAPQ12815 778 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 UBA3Q8TBC4 463 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 HES6Q96HZ4 224 aa17.97■□□□□ 0.47
SYNPO-201ENST00000307662 H2AFY2Q9P0M6 372 aaPredicted RBP17.97■□□□□ 0.47
SYNPO-201ENST00000307662 E9PBE3 544 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 RGS5O15539 181 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 TIMM44O43615 452 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 KLHL41O60662 606 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 ITGA4P13612 1032 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 CYP11B1P15538 503 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 PPIDQ08752 370 aaKnown RBP17.96■□□□□ 0.47
SYNPO-201ENST00000307662 LAMC2Q13753 1193 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 PABPC5Q96DU9 382 aaKnown RBP17.96■□□□□ 0.47
SYNPO-201ENST00000307662 FCGR1AP12314 374 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 NNMTP40261 264 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 RFC5P40937 340 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 MCL1Q07820 350 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 EXD1Q8NHP7 514 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 GANCQ8TET4 914 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 PGM2Q96G03 612 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 THUMPD3Q9BV44 507 aaKnown RBP17.96■□□□□ 0.47
SYNPO-201ENST00000307662 LATS2Q9NRM7 1088 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 IMPAD1Q9NX62 359 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 ETAA1Q9NY74 926 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 KIAA1210Q9ULL0 1709 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 SDR42E2A6NKP2 422 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 CYTH3O43739 400 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 SPDYCQ5MJ68 293 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 RUSC1Q9BVN2 902 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 CNGB3Q9NQW8 809 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 SLC30A1Q9Y6M5 507 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 GOLGA7BQ2TAP0 167 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 URGCPQ8TCY9 931 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 USP32Q8NFA0 1604 aa17.96■□□□□ 0.47
SYNPO-201ENST00000307662 AFF2P51816 1311 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 DIP2CQ9Y2E4 1556 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 UBE2Q2LH0YL09 131 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 FCHO1O14526 889 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ARIH2O95376 493 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 OCM2P0CE71 109 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 OCMP0CE72 109 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 CACNB2Q08289 660 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 GTF2H3Q13889 308 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 KCNV1Q6PIU1 500 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 FBXO33Q7Z6M2 555 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SLC10A4Q96EP9 437 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 OXNAD1Q96HP4 312 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 MXRA8Q9BRK3 442 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 DAPK2Q9UIK4 370 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 RUVBL2Q9Y230 463 aaKnown RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SOAT2O75908 522 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 NTSR2O95665 410 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SARSP49591 514 aaKnown RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 RGS4P49798 205 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 POU4F1Q01851 419 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 DENND5BQ6ZUT9 1274 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ANKS3Q6ZW76 656 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 MTERF3Q96E29 417 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 FAM49BQ9NUQ9 324 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 DDX18Q9NVP1 670 aaKnown RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SUPT7LO94864 414 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 IFI35P80217 286 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 C16orf72Q14CZ0 275 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 TTMPQ5BVD1 217 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 TSEN2Q8NCE0 465 aaKnown RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 RIN3Q8TB24 985 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 MMADHCQ9H3L0 296 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SAR1AQ9NR31 198 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 TBX20Q9UMR3 447 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ATF5Q9Y2D1 282 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 CD163L1Q9NR16 1453 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 SMNDC1O75940 238 aaKnown RBP eCLIP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 PYGMP11217 842 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 MMRN1Q13201 1228 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ATP1A4Q13733 1029 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ACCSLQ4AC99 568 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 PCNX4Q63HM2 1172 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 KYQ8NBH2 561 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 MIEF2Q96C03 454 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 RMND5BQ96G75 393 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 ABHD8Q96I13 439 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 TLR10Q9BXR5 811 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 RPAP3Q9H6T3 665 aaPredicted RBP17.95■□□□□ 0.46
SYNPO-201ENST00000307662 CATSPERBQ9H7T0 1116 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 USE1Q9NZ43 259 aa17.95■□□□□ 0.46
SYNPO-201ENST00000307662 KPNA4O00629 521 aaPredicted RBP17.94■□□□□ 0.46
SYNPO-201ENST00000307662 AVPR1AP37288 418 aa17.94■□□□□ 0.46
SYNPO-201ENST00000307662 ARMCX4Q5H9R4 360 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms