RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 GDPD5Q8WTR4 605 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF75CPQ92670 426 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 APOPT1Q96IL0 206 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 SUPT3HB4E1H0 165 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF263O14978 683 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 MYBL2P10244 700 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 TMEM119Q4V9L6 283 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 DEFB107AQ8IZN7 70 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 AFG1LQ8WV93 481 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 PRCCQ92733 491 aaPredicted RBP13.32□□□□□ -0.28
COL3A1-201ENST00000304636 MPP4Q96JB8 637 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 SPON2Q9BUD6 331 aa13.32□□□□□ -0.28
COL3A1-201ENST00000304636 ADGRB1O14514 1584 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TFE3P19532 575 aaPredicted RBP13.31□□□□□ -0.28
COL3A1-201ENST00000304636 BMP6P22004 513 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 C2CD6Q53TS8 623 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC60Q8IWA6 550 aaPredicted RBP13.31□□□□□ -0.28
COL3A1-201ENST00000304636 SLC5A5Q92911 643 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 PNMA5Q96PV4 448 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TARS2Q9BW92 718 aaKnown RBP13.31□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF556Q9HAH1 456 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 ZNF197O14709 1029 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 NDUFS3O75489 264 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 ATP4AP20648 1035 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CDK16Q00536 496 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 AGAP9Q5VTM2 703 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 RNF43Q68DV7 783 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 RIN3Q8TB24 985 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 RIOX1Q9H6W3 641 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CD163L1Q9NR16 1453 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 ZSCAN9O15535 394 aaPredicted RBP13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TNFAIP8O95379 198 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CBX6O95503 412 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 PYGLP06737 847 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 ALADP13716 330 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 PEX5P50542 639 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CDC42EP1Q00587 391 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 AMPD2Q01433 879 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 DDR1Q08345 913 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 PTK2BQ14289 1009 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CNGA2Q16280 664 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 KCNT1Q5JUK3 1230 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 MMP19Q99542 508 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 BTNL10A8MVZ5 291 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 UNC5CO95185 931 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 CPA3P15088 417 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 SLC45A4Q5BKX6 768 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 SPDYAQ5MJ70 313 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 IER5Q5VY09 327 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 DENND5BQ6ZUT9 1274 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 P3H2Q8IVL5 708 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 MCOLN2Q8IZK6 566 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TEX13BQ9BXU2 312 aa13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TSR3Q9UJK0 312 aaKnown RBP13.31□□□□□ -0.28
COL3A1-201ENST00000304636 TSPOAP1O95153 1857 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 TPST1O60507 370 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 RECQLP46063 649 aaPredicted RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 KRR1Q13601 381 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 DENND1BQ6P3S1 775 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 WDR59Q6PJI9 974 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 KYQ8NBH2 561 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 IPMKQ8NFU5 416 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 ASIC4Q96FT7 647 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 QTRT2Q9H974 415 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 FAM49BQ9NUQ9 324 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 AFF4Q9UHB7 1163 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 TULP2O00295 520 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 PSMG1O95456 288 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 C1QBPQ07021 282 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 CCDC15Q0P6D6 951 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 COG2Q14746 738 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 KIZQ2M2Z5 673 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 B4GALNT2Q8NHY0 566 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 SLC35C1Q96A29 364 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 SMARCAD1Q9H4L7 1026 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 LRRC40Q9H9A6 602 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 FAM32AQ9Y421 112 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 FKBP9O95302 570 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 CD4P01730 458 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 DDX5P17844 614 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 RAP1GDS1P52306 607 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 ZBTB49Q6ZSB9 765 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 FKBP9P1Q75LS8 142 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 HORMAD1Q86X24 394 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 THAP1Q9NVV9 213 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 ACTL7BQ9Y614 415 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 E9PBE3 544 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 KLHL41O60662 606 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 CLASP2O75122 1294 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 SOX11P35716 441 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 MTMR2Q13614 643 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 PKN2Q16513 984 aaKnown RBP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 DCAF6Q58WW2 860 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 LPCAT2Q7L5N7 544 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 TAS1R2Q8TE23 839 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 CATSPERBQ9H7T0 1116 aa13.3□□□□□ -0.28
COL3A1-201ENST00000304636 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.3□□□□□ -0.28
COL3A1-201ENST00000304636 ASB14A6NK59 587 aa13.29□□□□□ -0.28
COL3A1-201ENST00000304636 ANXA9O76027 345 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms