RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SYT15Q9BQS2 421 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 MTMR12Q9C0I1 747 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 IKZF4Q9H2S9 585 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 LINC00597Q9H2U6 94 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 EVLQ9UI08 416 aaPredicted RBP15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 SIX4Q9UIU6 781 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 ASCC3Q8N3C0 2202 aaKnown RBP15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 PI4KAP42356 2102 aa15.8■□□□□ 0.12
CCDC88B-201ENST00000301897 K7EQS6 105 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 GRIK1P39086 918 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 OPRD1P41143 372 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 WNT7BP56706 349 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 LMAN2Q12907 356 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 DUOXA2Q1HG44 320 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 SPDYCQ5MJ68 293 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 SH3PXD2AQ5TCZ1 1133 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 ANO7Q6IWH7 933 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 UNQ6494/PRO21346Q6UXR6 183 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 CCDC73Q6ZRK6 1079 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 STXBP4Q6ZWJ1 553 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 GPD1LQ8N335 351 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 HPDLQ96IR7 371 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 TTLL2Q9BWV7 592 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 TPSD1Q9BZJ3 242 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 PDE11AQ9HCR9 933 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 INTS13Q9NVM9 706 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 TBC1D7Q9P0N9 293 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 SRPRBQ9Y5M8 271 aaKnown RBP15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 PCNX2A6NKB5 2137 aa15.79■□□□□ 0.12
CCDC88B-201ENST00000301897 PTPRDP23468 1912 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 LEFTY2O00292 366 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 IDEP14735 1019 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 PDCP20941 246 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 DHPSP49366 369 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 SEC13P55735 322 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 NOP14P78316 857 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 SLC7A9P82251 487 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 CRY1Q16526 586 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 PREPLQ4J6C6 727 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 LPCAT2Q7L5N7 544 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 WHAMMQ8TF30 809 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 NOC3LQ8WTT2 800 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 MYLPFQ96A32 169 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 CBWD1Q9BRT8 395 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 NUSAP1Q9BXS6 441 aaKnown RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 KIAA1586Q9HCI6 787 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 POLMQ9NP87 494 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 PKD1L2Q7Z442 2459 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 BAHCC1Q9P281 2608 aa15.78■□□□□ 0.12
CCDC88B-201ENST00000301897 FRMD3A2A2Y4 597 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 GOLGA8IPA6NC78 632 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 ZNF233A6NK53 670 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 GOLGA8JA6NMD2 632 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 PALM2-AKAP2B1ALY0 433 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 TNFRSF10BO14763 440 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 CD2BP2O95400 341 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 ADH1CP00326 375 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 APODP05090 189 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 CYP17A1P05093 508 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 FAM163BP0C2L3 166 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 WARSP23381 471 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 BDNFP23560 247 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 HOXD12P35452 270 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 CYP27A1Q02318 531 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 USP49Q70CQ1 688 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 FILIP1Q7Z7B0 1213 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 ADGRG2Q8IZP9 1017 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 KDF1Q8NAX2 398 aaPredicted RBP15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 ZSWIM2Q8NEG5 633 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 MDGA1Q8NFP4 955 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 OLIG1Q8TAK6 271 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 MYCBPAPQ8TBZ2 947 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 C8orf48Q96LL4 319 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 SLITRK1Q96PX8 696 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 PNKPQ96T60 521 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 PCIF1Q9H4Z3 704 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 UPF2Q9HAU5 1272 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 TBC1D14Q9P2M4 693 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 INVSQ9Y283 1065 aa15.77■□□□□ 0.12
CCDC88B-201ENST00000301897 MYO18AQ92614 2054 aaKnown RBP15.77■□□□□ 0.11
CCDC88B-201ENST00000301897 CACNA1EQ15878 2313 aa15.77■□□□□ 0.11
CCDC88B-201ENST00000301897 ASPMQ8IZT6 3477 aa15.77■□□□□ 0.11
CCDC88B-201ENST00000301897 PLXND1Q9Y4D7 1925 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 ANKRD11Q6UB99 2663 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 ZNF840PA6NDX5 716 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CDX4O14627 284 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 GIPC1O14908 333 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 MAP3K13O43283 966 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 ATP2C2O75185 946 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 P2RY2P41231 377 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 STAT6P42226 847 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 TNFRSF4P43489 277 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CASP5P51878 434 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 PSMC1P62191 440 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 FOXC1Q12948 553 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 RESTQ13127 1097 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 DHCR24Q15392 516 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 CCDC142Q17RM4 750 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 EOGTQ5NDL2 527 aa15.76■□□□□ 0.11
CCDC88B-201ENST00000301897 TDRD10Q5VZ19 366 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms