RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SRPK1Q96SB4 655 aaKnown RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 NAP1L4Q99733 375 aaKnown RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 CCDC106Q9BWC9 280 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 MRPL1Q9BYD6 325 aaKnown RBP14.08□□□□□ -0.16
SKA3-201ENST00000298260 NYXQ9GZU5 481 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 RMI1Q9H9A7 625 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TMOD2Q9NZR1 351 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 AFG3L2Q9Y4W6 797 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 GMEB1Q9Y692 573 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 IVNS1ABPQ9Y6Y0 642 aa14.08□□□□□ -0.16
SKA3-201ENST00000298260 TM9SF1O15321 606 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 ATP9BO43861 1147 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 UGT1A9O60656 530 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 PROSCO94903 275 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 STIP1P31948 543 aaKnown RBP14.07□□□□□ -0.16
SKA3-201ENST00000298260 NCKAP1LP55160 1127 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 GSTO1P78417 241 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 EN1Q05925 392 aaPredicted RBP14.07□□□□□ -0.16
SKA3-201ENST00000298260 ZNF772Q68DY9 489 aaPredicted RBP14.07□□□□□ -0.16
SKA3-201ENST00000298260 KLC3Q6P597 504 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 ZNF554Q86TJ5 538 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 RHOT1Q8IXI2 618 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 CPNE9Q8IYJ1 553 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 GRIN3AQ8TCU5 1115 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 TMIGD2Q96BF3 282 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 UGT1A7Q9HAW7 530 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 UGT1A10Q9HAW8 530 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 UGT1A8Q9HAW9 530 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 BTBD7Q9P203 1132 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 STRIP2Q9ULQ0 834 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 SBF2Q86WG5 1849 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 CNTNAP4Q9C0A0 1308 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 PEX1O43933 1283 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 KRT1P04264 644 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 MTA1Q13330 715 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 CCDC142Q17RM4 750 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 SPOPLQ6IQ16 392 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 CLEC4GQ6UXB4 293 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 AMIGO2Q86SJ2 522 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 CTAGE3PQ8IX95 158 aa14.07□□□□□ -0.16
SKA3-201ENST00000298260 C6orf229H3BNL8 230 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 DKC1O60832 514 aaKnown RBP eCLIP14.06□□□□□ -0.16
SKA3-201ENST00000298260 DHRS4L1P0CG22 281 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 RPL5P46777 297 aaKnown RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 NOVP48745 357 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 CYLC2Q14093 348 aaPredicted RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 SMTNL2Q2TAL5 461 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 ANKDD1AQ495B1 522 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 SH2D4BQ5SQS7 431 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 MFSD14BQ5SR56 506 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 OTOP1Q7RTM1 612 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 POLNQ7Z5Q5 900 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 GALNT4Q8N4A0 578 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 ICA1LQ8NDH6 482 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 CPT1BQ92523 772 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 SENP6Q9GZR1 1112 aaPredicted RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 ACSS3Q9H6R3 686 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 PFDN4Q9NQP4 134 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 MYPNQ86TC9 1320 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 TRIM49D1C9J1S8 452 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 F8VP50 259 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 TLR3O15455 904 aaKnown RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 LDHCP07864 332 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 UNGP13051 313 aaPredicted RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 RFX1P22670 979 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 SFSWAPQ12872 951 aaKnown RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 MORF4L2Q15014 288 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 TMEM259Q4ZIN3 620 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 C6orf52Q5T4I8 152 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 VWA5B1Q5TIE3 1220 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 DEFB132Q7Z7B7 95 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 ZBTB46Q86UZ6 589 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 ARL10Q8N8L6 244 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 XXYLT1Q8NBI6 393 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 LRRN4Q8WUT4 740 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 CNTN3Q9P232 1028 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.06□□□□□ -0.16
SKA3-201ENST00000298260 ZNF180Q9UJW8 692 aa14.06□□□□□ -0.16
SKA3-201ENST00000298260 SLC16A4O15374 487 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 NSFP46459 744 aaKnown RBP14.05□□□□□ -0.16
SKA3-201ENST00000298260 PSMC5P62195 406 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 MYBPC1Q00872 1141 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 ZBTB8BQ8NAP8 495 aaPredicted RBP14.05□□□□□ -0.16
SKA3-201ENST00000298260 ATP11CQ8NB49 1132 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 APOPT1Q96IL0 206 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 SENP7Q9BQF6 1050 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 IQCGQ9H095 443 aaKnown RBP14.05□□□□□ -0.16
SKA3-201ENST00000298260 RBM38Q9H0Z9 239 aaKnown RBP14.05□□□□□ -0.16
SKA3-201ENST00000298260 SOX13Q9UN79 622 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 IRS2Q9Y4H2 1338 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 DNAJA2O60884 412 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 TGDSO95455 350 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 PDGFRBP09619 1106 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 COL6A2P12110 1019 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 GMPRP36959 345 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 FDFT1P37268 417 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 ELK3P41970 407 aa14.05□□□□□ -0.16
SKA3-201ENST00000298260 YWHAGP61981 247 aaKnown RBP eCLIP14.05□□□□□ -0.16
SKA3-201ENST00000298260 PPIDQ08752 370 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms