RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TRMT6Q9UJA5 497 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 TSR3Q9UJK0 312 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 IGF2BP3O00425 579 aaKnown RBP eCLIP19.86■□□□□ 0.77
UPF1-201ENST00000262803 NPM3O75607 178 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 IRF1P10914 325 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 ACAD10Q6JQN1 1059 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 AGXT2Q9BYV1 514 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 UBE2OQ9C0C9 1292 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 FAM49BQ9NUQ9 324 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 EIF3LQ9Y262 564 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 ZC3H13Q5T200 1668 aaKnown RBP19.86■□□□□ 0.77
UPF1-201ENST00000262803 UPP2O95045 317 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 URODP06132 367 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 SLC15A2Q16348 729 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 TRIM60Q495X7 471 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 AGAP9Q5VTM2 703 aa19.86■□□□□ 0.77
UPF1-201ENST00000262803 USP33Q8TEY7 942 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 ATG4CQ96DT6 458 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 CAP2P40123 477 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 ZRANB3Q5FWF4 1079 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 TMC2Q8TDI7 906 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 HSPA13P48723 471 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 HERVK_113P62684 666 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 R3HDM1Q15032 1099 aaKnown RBP19.85■□□□□ 0.77
UPF1-201ENST00000262803 CACHD1Q5VU97 1274 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 KDM7AQ6ZMT4 941 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 NLRP9Q7RTR0 991 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 FAM162AQ96A26 154 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 CEP170BQ9Y4F5 1589 aaPredicted RBP19.85■□□□□ 0.77
UPF1-201ENST00000262803 LSM8O95777 96 aaKnown RBP19.85■□□□□ 0.77
UPF1-201ENST00000262803 NFE2Q16621 373 aaPredicted RBP19.85■□□□□ 0.77
UPF1-201ENST00000262803 PACSIN1Q9BY11 444 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 AURKCQ9UQB9 309 aa19.85■□□□□ 0.77
UPF1-201ENST00000262803 DPEP1P16444 411 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 RPS6P62753 249 aaKnown RBP19.84■□□□□ 0.77
UPF1-201ENST00000262803 POU4F1Q01851 419 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 MRPL48Q96GC5 212 aaKnown RBP19.84■□□□□ 0.77
UPF1-201ENST00000262803 TMEM39BQ9GZU3 492 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 TRPM5Q9NZQ8 1165 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 ADAMTS13Q76LX8 1427 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 SYNDIG1LA6NDD5 238 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 TOMM70O94826 608 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 BRD2P25440 801 aaKnown RBP19.84■□□□□ 0.77
UPF1-201ENST00000262803 CNTFP26441 200 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 LRRC71Q8N4P6 559 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 ZNF557Q8N988 423 aaPredicted RBP19.84■□□□□ 0.77
UPF1-201ENST00000262803 C3orf20Q8ND61 904 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 DNERQ8NFT8 737 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 IPMKQ8NFU5 416 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 GMCL1Q96IK5 515 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 WDCPQ9H6R7 721 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 CASP4P49662 377 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 BCAT1P54687 386 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 SERPINB12Q96P63 405 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 TAAR1Q96RJ0 339 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 SCN3BQ9NY72 215 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 PJA2O43164 708 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 VPS26AO75436 327 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 CORO7P57737 925 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 ZNF280DQ6N043 979 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 COL23A1Q86Y22 540 aaPredicted RBP19.84■□□□□ 0.77
UPF1-201ENST00000262803 RMND5AQ9H871 391 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 DIP2AQ14689 1571 aa19.84■□□□□ 0.77
UPF1-201ENST00000262803 ALOX15P16050 662 aaPredicted RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 RENBPP51606 427 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 HORMAD1Q86X24 394 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 METTL5Q9NRN9 209 aaKnown RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 TIMM44O43615 452 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 MAPTP10636 758 aaKnown RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 CGRRF1Q99675 332 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 THTPAQ9BU02 230 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 DMGDHQ9UI17 866 aaKnown RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 FAM47E-STBD1D6RA91 191 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 NCAM2O15394 837 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 GUCA1CO95843 209 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 ENO3P13929 434 aaPredicted RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 FGFR2P21802 821 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 CCND1P24385 295 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 EPHB3P54753 998 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 LRRC36Q1X8D7 754 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 ZNF438Q7Z4V0 828 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 FAM71DQ8N9W8 422 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 C1orf131Q8NDD1 294 aaKnown RBP19.83■□□□□ 0.77
UPF1-201ENST00000262803 UBA3Q8TBC4 463 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 ZDHHC15Q96MV8 337 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 DTNAQ9Y4J8 743 aa19.83■□□□□ 0.77
UPF1-201ENST00000262803 FAM205AQ6ZU69 1335 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 NRXN1Q9ULB1 1477 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 CHRM3P20309 590 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 CNGA3Q16281 694 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 COBLL1Q53SF7 1204 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 TJAP1Q5JTD0 557 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 TSEN34Q9BSV6 310 aaKnown RBP19.83■□□□□ 0.76
UPF1-201ENST00000262803 B2RBV5 119 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 THPOP40225 353 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 RUNX1T1Q06455 604 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 STX5Q13190 355 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 FBXO28Q9NVF7 368 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 WWOXQ9NZC7 414 aa19.83■□□□□ 0.76
UPF1-201ENST00000262803 ARHGAP20Q9P2F6 1191 aa19.83■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms