RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 SIK3Q9Y2K2 1263 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 UPP2O95045 317 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PRAMEP78395 509 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PHEXP78562 749 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 POLD3Q15054 466 aaPredicted RBP14.24□□□□□ -0.13
LDLR-201ENST00000252444 MAMDC4Q6UXC1 1216 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 RASSF3Q86WH2 238 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 PXYLP1Q8TE99 480 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 FGFR1OP2Q9NVK5 253 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 COL24A1Q17RW2 1714 aa14.24□□□□□ -0.13
LDLR-201ENST00000252444 COPEO14579 308 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 OPLAHO14841 1288 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 TMCC1O94876 653 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 AGTP01019 485 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 HSPA9P38646 679 aaKnown RBP14.23□□□□□ -0.13
LDLR-201ENST00000252444 SH2D3AQ9BRG2 576 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 UTP6Q9NYH9 597 aaKnown RBP14.23□□□□□ -0.13
LDLR-201ENST00000252444 COL5A3P25940 1745 aaPredicted RBP14.23□□□□□ -0.13
LDLR-201ENST00000252444 A0A1B0GUA9 196 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 DFFAO00273 331 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 ATP1A1P05023 1023 aaKnown RBP14.23□□□□□ -0.13
LDLR-201ENST00000252444 RGS7P49802 495 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 CCNG2Q16589 344 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 MDH1BQ5I0G3 518 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.23□□□□□ -0.132e-6■■□□□ 12
LDLR-201ENST00000252444 ACOT1Q86TX2 421 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 CXCR5P32302 372 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 GNGT1P63211 74 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 CASP8Q14790 479 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 AMIGO3Q86WK7 504 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 SPPL2BQ8TCT7 592 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 TMEM175Q9BSA9 504 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 H2AFYO75367 372 aaKnown RBP14.23□□□□□ -0.13
LDLR-201ENST00000252444 ATP5HO75947 161 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 ADH1AP07327 375 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 NDST1P52848 882 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 AGBL2Q5U5Z8 902 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 FAM71AQ8IYT1 594 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 GANCQ8TET4 914 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 ISCUQ9H1K1 167 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 KLK14Q9P0G3 267 aa14.23□□□□□ -0.13
LDLR-201ENST00000252444 ZNF197O14709 1029 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 GPC4O75487 556 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 MOCS2O96007 188 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 CTCFP49711 727 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 IL17AQ16552 155 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 PSRC1Q6PGN9 363 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 VSTM1Q6UX27 236 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 ANKRD42Q8N9B4 389 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 RILPQ96NA2 401 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CINPQ9BW66 212 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 EML4Q9HC35 981 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 FAM105AQ9NUU6 356 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 NDE1Q9NXR1 346 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 HDAC6Q9UBN7 1215 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 M0QYT0 321 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 KCNN4O15554 427 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 KCNK18Q7Z418 384 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 ZNF606Q8WXB4 792 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 DCUN1D1Q96GG9 259 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 MUC3BQ9H195 1237 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 POPDC2Q9HBU9 364 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CCNE2O96020 404 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 PYGLP06737 847 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 TSHRP16473 764 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CYP4F22Q6NT55 531 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CXCL17Q6UXB2 119 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 LRRC8DQ7L1W4 858 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 PSTKQ8IV42 348 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 SENP8Q96LD8 212 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 GOLPH3Q9H4A6 298 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 DDIT4Q9NX09 232 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 ERI2A8K979 691 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 MBL2P11226 248 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 KCNA3P22001 575 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 BEX3Q00994 111 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 TSNAXIP1Q2TAA8 658 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 NYAP1Q6ZVC0 841 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CCDC197Q8NCU1 140 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 SHC3Q92529 594 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 DPF3Q92784 378 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 XPO6Q96QU8 1125 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 ANKRD63C9JTQ0 380 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 MMEP08473 750 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 CALRP27797 417 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 GJA9P57773 515 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 ERMARDQ5T6L9 678 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 EPM2AIP1Q7L775 607 aaPredicted RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 POLNQ7Z5Q5 900 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 MRRFQ96E11 262 aaKnown RBP14.22□□□□□ -0.13
LDLR-201ENST00000252444 PI4K2AQ9BTU6 479 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 TSPAN16Q9UKR8 245 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 ST3GAL5Q9UNP4 418 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 SNX24Q9Y343 169 aa14.22□□□□□ -0.13
LDLR-201ENST00000252444 SNX2O60749 519 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 RNASEH1O60930 286 aaKnown RBP14.21□□□□□ -0.13
LDLR-201ENST00000252444 MICAL2O94851 1124 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 CYP1A2P05177 515 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 NOS2P35228 1153 aa14.21□□□□□ -0.13
LDLR-201ENST00000252444 COILP38432 576 aaPredicted RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms