RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	YOR072W	Q08486	104 aa		0.97	□□□□□ -2.25
CUP9	YPL177C	TY4B-J	P47024	1803 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	RPS22A	P0C0W1	130 aa	Known RBP	0.96	□□□□□ -2.26
CUP9	YPL177C	UBC5	P15732	148 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	YJL009W	P47078	108 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	RPS12	P48589	143 aa	Known RBP	0.96	□□□□□ -2.26
CUP9	YPL177C	MGR2	Q02889	113 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	HPA2	Q06592	156 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	FCF2	Q12035	217 aa	Predicted RBP	0.96	□□□□□ -2.26
CUP9	YPL177C	YOR097C	Q12274	175 aa	Predicted RBP	0.96	□□□□□ -2.26
CUP9	YPL177C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.96	□□□□□ -2.26
CUP9	YPL177C	SPP41	P38904	1435 aa		0.96	□□□□□ -2.26
CUP9	YPL177C	ADK1	P07170	222 aa	Known RBP	0.95	□□□□□ -2.26
CUP9	YPL177C	YSF3	P0C074	85 aa	Predicted RBP	0.95	□□□□□ -2.26
CUP9	YPL177C	HHY1	P39982	102 aa		0.95	□□□□□ -2.26
CUP9	YPL177C	YFR035C	P43608	114 aa		0.95	□□□□□ -2.26
CUP9	YPL177C	OCA6	Q12454	224 aa		0.95	□□□□□ -2.26
CUP9	YPL177C	MED11	Q99278	115 aa		0.95	□□□□□ -2.26
CUP9	YPL177C	SKI3	P17883	1432 aa	Known RBP	0.95	□□□□□ -2.26
CUP9	YPL177C	HFA1	P32874	2273 aa		0.95	□□□□□ -2.26
CUP9	YPL177C	YBR090C	P38253	122 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	TDA2	P40045	126 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	MIC27	P50945	234 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	YGR164W	P53291	111 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	YIL014C-A	Q02598	104 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	YLR194C	Q05777	254 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	YLR042C	Q07990	161 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	YPL225W	Q08971	146 aa	Known RBP	0.94	□□□□□ -2.26
CUP9	YPL177C	FYV7	Q12247	151 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	RTR2	Q12378	196 aa		0.94	□□□□□ -2.26
CUP9	YPL177C	NUM1	Q00402	2748 aa		0.93	□□□□□ -2.26
CUP9	YPL177C	TRM732	Q03496	1420 aa		0.93	□□□□□ -2.26
CUP9	YPL177C	YBR013C	P38215	129 aa		0.93	□□□□□ -2.26
CUP9	YPL177C	PAU12	P53343	120 aa		0.93	□□□□□ -2.26
CUP9	YPL177C	LAA1	P39526	2014 aa		0.93	□□□□□ -2.26
CUP9	YPL177C	YCR099C	P25657	155 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	EMP24	P32803	203 aa	Known RBP	0.92	□□□□□ -2.26
CUP9	YPL177C	YHR130C	P38834	111 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YAR029W	P39549	74 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YIL163C	P40448	117 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	MVB12	P42939	101 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	PAM16	P42949	149 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	COA6	Q3E846	104 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YCL001W-B	Q96VH2	84 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YRF1-3	P0CX14	1859 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YRF1-7	P0CX15	1859 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	KRE5	P22023	1365 aa		0.92	□□□□□ -2.26
CUP9	YPL177C	YEA6	P39953	335 aa		0.91	□□□□□ -2.26
CUP9	YPL177C	YMR103C	Q04436	120 aa		0.91	□□□□□ -2.26
CUP9	YPL177C	YPL261C	Q08976	102 aa		0.91	□□□□□ -2.26
CUP9	YPL177C	YHR213W-B	Q8TGK1	99 aa		0.91	□□□□□ -2.26
CUP9	YPL177C	RPL22A	P05749	121 aa	Known RBP	0.9	□□□□□ -2.27
CUP9	YPL177C	YJL197C-A	P0C5P0	93 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	UBC4	P15731	148 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	YIR020C	P40575	100 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	GNA1	P43577	159 aa	Predicted RBP	0.9	□□□□□ -2.27
CUP9	YPL177C	FIT3	Q08907	204 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	YKL068W-A	Q3E826	78 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	YCR075W-A	Q3E830	75 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	HUG1	Q6Q5K6	68 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	KSH1	Q8TGJ3	72 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	OST5	Q92316	86 aa		0.9	□□□□□ -2.27
CUP9	YPL177C	YSP2	Q06681	1438 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	BNI1	P41832	1953 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	MRPL31	P14063	131 aa	Predicted RBP	0.89	□□□□□ -2.27
CUP9	YPL177C	CYB5	P40312	120 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	YLR285C-A	Q3E771	56 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	PCC1	Q3E833	88 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	MIC10	Q96VH5	97 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	ENV10	Q99382	181 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	PDR11	P40550	1411 aa		0.89	□□□□□ -2.27
CUP9	YPL177C	PDR10	P51533	1564 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.88	□□□□□ -2.27
CUP9	YPL177C	LYS2	P07702	1392 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	COX23	P38824	151 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	YER187W	P40102	141 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	YMR141C	P40211	102 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	POR2	P40478	281 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	RPL22B	P56628	122 aa	Known RBP	0.88	□□□□□ -2.27
CUP9	YPL177C	SCP1	Q08873	200 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	DAD1	Q12248	94 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	YLR365W	Q7LIF2	110 aa		0.88	□□□□□ -2.27
CUP9	YPL177C	GEA1	P47102	1408 aa	Predicted RBP	0.88	□□□□□ -2.27
CUP9	YPL177C	YRF1-6	P53819	1859 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	PAU2	P32612	120 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	SRX1	P36077	127 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	PAU24	P38155	120 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	SNN1	P48232	102 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	YMR082C	Q04276	118 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	ZEO1	Q08245	113 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	YGL194C-A	Q2V2P6	80 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	REV3	P14284	1504 aa		0.87	□□□□□ -2.27
CUP9	YPL177C	HMRA2	P0CY13	119 aa		0.86	□□□□□ -2.27
CUP9	YPL177C	GTT1	P40582	234 aa		0.86	□□□□□ -2.27
CUP9	YPL177C	NHP10	Q03435	203 aa		0.86	□□□□□ -2.27
CUP9	YPL177C	YOS1	Q3E834	85 aa		0.86	□□□□□ -2.27
CUP9	YPL177C	GEA2	P39993	1459 aa	Known RBP	0.86	□□□□□ -2.27
CUP9	YPL177C	PAU19	P0CE85	124 aa		0.85	□□□□□ -2.27
CUP9	YPL177C	PAU3	P25610	124 aa		0.85	□□□□□ -2.27
CUP9	YPL177C	HUR1	P45820	110 aa		0.85	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 72.2 ms