RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YOR376W-AQ3E805 51 aa1.26□□□□□ -2.21
UPF3YGR072W TDA2P40045 126 aa1.25□□□□□ -2.21
UPF3YGR072W YOR097CQ12274 175 aaPredicted RBP1.25□□□□□ -2.21
UPF3YGR072W HFA1P32874 2273 aa1.25□□□□□ -2.21
UPF3YGR072W YMR141CP40211 102 aa1.24□□□□□ -2.21
UPF3YGR072W YIL163CP40448 117 aa1.24□□□□□ -2.21
UPF3YGR072W YFR035CP43608 114 aa1.24□□□□□ -2.21
UPF3YGR072W YIL014C-AQ02598 104 aa1.24□□□□□ -2.21
UPF3YGR072W YLR194CQ05777 254 aa1.24□□□□□ -2.21
UPF3YGR072W HUG1Q6Q5K6 68 aa1.24□□□□□ -2.21
UPF3YGR072W MRPL31P14063 131 aaPredicted RBP1.23□□□□□ -2.21
UPF3YGR072W ICS3P47034 131 aa1.23□□□□□ -2.21
UPF3YGR072W YPL261CQ08976 102 aa1.23□□□□□ -2.21
UPF3YGR072W RTR2Q12378 196 aa1.23□□□□□ -2.21
UPF3YGR072W OST5Q92316 86 aa1.23□□□□□ -2.21
UPF3YGR072W ECM5Q03214 1411 aa1.23□□□□□ -2.21
UPF3YGR072W RPL22AP05749 121 aaKnown RBP1.22□□□□□ -2.21
UPF3YGR072W YOR304C-AO14468 76 aa1.21□□□□□ -2.22
UPF3YGR072W PAM16P42949 149 aa1.21□□□□□ -2.22
UPF3YGR072W ARL3Q02804 198 aa1.21□□□□□ -2.22
UPF3YGR072W YLR042CQ07990 161 aa1.21□□□□□ -2.22
UPF3YGR072W GSC2P40989 1895 aa1.2□□□□□ -2.22
UPF3YGR072W EMP24P32803 203 aaKnown RBP1.2□□□□□ -2.22
UPF3YGR072W POR2P40478 281 aa1.2□□□□□ -2.22
UPF3YGR072W RPL22BP56628 122 aaKnown RBP1.2□□□□□ -2.22
UPF3YGR072W YMR321CQ04898 105 aa1.2□□□□□ -2.22
UPF3YGR072W DAD1Q12248 94 aa1.2□□□□□ -2.22
UPF3YGR072W SRX1P36077 127 aa1.19□□□□□ -2.22
UPF3YGR072W YAR029WP39549 74 aa1.19□□□□□ -2.22
UPF3YGR072W YER187WP40102 141 aa1.19□□□□□ -2.22
UPF3YGR072W GTT1P40582 234 aa1.19□□□□□ -2.22
UPF3YGR072W PAU12P53343 120 aa1.19□□□□□ -2.22
UPF3YGR072W OCA6Q12454 224 aa1.19□□□□□ -2.22
UPF3YGR072W YGL041C-BQ3E750 60 aa1.19□□□□□ -2.22
UPF3YGR072W ENV10Q99382 181 aa1.19□□□□□ -2.22
UPF3YGR072W TY4B-JP47024 1803 aa1.19□□□□□ -2.22
UPF3YGR072W YHR130CP38834 111 aa1.18□□□□□ -2.22
UPF3YGR072W YLR363W-AQ3E747 85 aa1.18□□□□□ -2.22
UPF3YGR072W PCC1Q3E833 88 aa1.18□□□□□ -2.22
UPF3YGR072W SPP41P38904 1435 aa1.17□□□□□ -2.22
UPF3YGR072W ADK1P07170 222 aaKnown RBP1.17□□□□□ -2.22
UPF3YGR072W SNN1P48232 102 aa1.17□□□□□ -2.22
UPF3YGR072W YGR240C-AQ3E786 66 aa1.17□□□□□ -2.22
UPF3YGR072W YLR365WQ7LIF2 110 aa1.17□□□□□ -2.22
UPF3YGR072W COX23P38824 151 aa1.16□□□□□ -2.22
UPF3YGR072W CYB5P40312 120 aa1.16□□□□□ -2.22
UPF3YGR072W RPL43AP0CX25 92 aaKnown RBP1.15□□□□□ -2.23
UPF3YGR072W RPL43BP0CX26 92 aa1.15□□□□□ -2.23
UPF3YGR072W SWC7Q06707 132 aa1.15□□□□□ -2.23
UPF3YGR072W YLR285C-AQ3E771 56 aa1.15□□□□□ -2.23
UPF3YGR072W YPK9Q12697 1472 aa1.14□□□□□ -2.23
UPF3YGR072W YIR020CP40575 100 aa1.14□□□□□ -2.23
UPF3YGR072W YGR164WP53291 111 aa1.14□□□□□ -2.23
UPF3YGR072W RUB1Q03919 77 aa1.14□□□□□ -2.23
UPF3YGR072W YOR034C-AQ3E735 80 aa1.14□□□□□ -2.23
UPF3YGR072W VMA21P41806 77 aa1.13□□□□□ -2.23
UPF3YGR072W YJR128WP47162 119 aa1.13□□□□□ -2.23
UPF3YGR072W YRF1-3P0CX14 1859 aa1.12□□□□□ -2.23
UPF3YGR072W YRF1-7P0CX15 1859 aa1.12□□□□□ -2.23
UPF3YGR072W YER039C-AP0CD97 72 aa1.12□□□□□ -2.23
UPF3YGR072W HUR1P45820 110 aa1.12□□□□□ -2.23
UPF3YGR072W PAU2P32612 120 aa1.11□□□□□ -2.23
UPF3YGR072W HMRA2P0CY13 119 aa1.1□□□□□ -2.23
UPF3YGR072W PAU24P38155 120 aa1.1□□□□□ -2.23
UPF3YGR072W YEA6P39953 335 aa1.1□□□□□ -2.23
UPF3YGR072W VPS55P47111 140 aa1.1□□□□□ -2.23
UPF3YGR072W YCL048W-AQ2V2Q2 79 aa1.1□□□□□ -2.23
UPF3YGR072W YLR307C-AQ3E825 87 aa1.1□□□□□ -2.23
UPF3YGR072W PAU19P0CE85 124 aa1.09□□□□□ -2.23
UPF3YGR072W PAU3P25610 124 aa1.09□□□□□ -2.23
UPF3YGR072W GNA1P43577 159 aaPredicted RBP1.09□□□□□ -2.23
UPF3YGR072W DNA2P38859 1522 aa1.09□□□□□ -2.24
UPF3YGR072W MDS3P53094 1487 aa1.08□□□□□ -2.24
UPF3YGR072W LCL1Q02786 101 aa1.08□□□□□ -2.24
UPF3YGR072W YLR157W-EP0CF00 54 aa1.07□□□□□ -2.24
UPF3YGR072W RPS12P48589 143 aaKnown RBP1.07□□□□□ -2.24
UPF3YGR072W LHP1P33399 275 aaKnown RBP1.06□□□□□ -2.24
UPF3YGR072W YHR138CP38841 114 aaPredicted RBP1.06□□□□□ -2.24
UPF3YGR072W RGI1P40043 161 aaPredicted RBP1.06□□□□□ -2.24
UPF3YGR072W LSM6Q06406 86 aaKnown RBP1.06□□□□□ -2.24
UPF3YGR072W YOS1Q3E834 85 aa1.06□□□□□ -2.24
UPF3YGR072W SRB6P32570 121 aa1.05□□□□□ -2.24
UPF3YGR072W YER137CP40083 148 aaKnown RBP1.05□□□□□ -2.24
UPF3YGR072W LAA1P39526 2014 aa1.05□□□□□ -2.24
UPF3YGR072W MRPS12P53732 153 aa1.04□□□□□ -2.24
UPF3YGR072W YMR103CQ04436 120 aa1.04□□□□□ -2.24
UPF3YGR072W YOL118CQ08259 102 aa1.04□□□□□ -2.24
UPF3YGR072W TSC11P40061 1430 aa1.04□□□□□ -2.24
UPF3YGR072W TY1B-HO13535 1793 aa1.03□□□□□ -2.24
UPF3YGR072W YMR090WQ04304 227 aaKnown RBP1.03□□□□□ -2.24
UPF3YGR072W YLR419WQ06698 1435 aaKnown RBP1.03□□□□□ -2.24
UPF3YGR072W BUD23P25627 275 aaPredicted RBP1.02□□□□□ -2.25
UPF3YGR072W PAU16P35994 123 aa1.02□□□□□ -2.25
UPF3YGR072W YBR090CP38253 122 aa1.02□□□□□ -2.25
UPF3YGR072W PAU15P40585 124 aa1.02□□□□□ -2.25
UPF3YGR072W LYS2P07702 1392 aa1.01□□□□□ -2.25
UPF3YGR072W IMP2P46972 177 aa1.01□□□□□ -2.25
UPF3YGR072W MIC10Q96VH5 97 aa1.01□□□□□ -2.25
UPF3YGR072W CCW14O13547 238 aa1□□□□□ -2.25
UPF3YGR072W UBC4P15731 148 aa1□□□□□ -2.25
Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms