RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 SAE1Q9UBE0 346 aaPredicted RBP21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 COL11A1P12107 1806 aaPredicted RBP21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 SIGLEC16A6NMB1 481 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 LRCH4O75427 683 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 RFC1P35251 1148 aaPredicted RBP21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 GCKP35557 465 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 SP2Q02086 613 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 CXCL9Q07325 125 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 CAPSQ13938 189 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 CMPK2Q5EBM0 449 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 TFAP2BQ92481 460 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 TUBB6Q9BUF5 446 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 ZWILCHQ9H900 591 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 ADAMTS5Q9UNA0 930 aa21.09■□□□□ 0.97
SYNGAP1-227ENST00000638142 KIF3CO14782 793 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 FAM189A1O60320 539 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 LMNAP02545 664 aaKnown RBP21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 KRT3P12035 628 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 KDELR1P24390 212 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 MARK3P27448 753 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 TNFSF9P41273 254 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 RAD23BP54727 409 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 DUOXA2Q1HG44 320 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 TRIM55Q9BYV6 548 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 MAF1Q9H063 256 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 ACAD9Q9H845 621 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 MANSC1Q9H8J5 431 aa21.08■□□□□ 0.97
SYNGAP1-227ENST00000638142 CDC25CP30307 473 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 SMTNL2Q2TAL5 461 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 CFAP61Q8NHU2 1237 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 TOM1L1O75674 476 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 IL1R2P27930 398 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 ICAM3P32942 547 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 YWHAEP62258 255 aaKnown RBP21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 SURF1Q15526 300 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 NAIF1Q69YI7 327 aaPredicted RBP21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 CYTH2Q99418 400 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 TEX13BQ9BXU2 312 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 DENND2DQ9H6A0 471 aaPredicted RBP21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 KANSL3Q9P2N6 904 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 RLFQ13129 1914 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 PHIPQ8WWQ0 1821 aa21.07■□□□□ 0.96
SYNGAP1-227ENST00000638142 WDR91A4D1P6 747 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 TMEM63AO94886 807 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 PSMC4P43686 418 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 TRPC3Q13507 836 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 BBS9Q3SYG4 887 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 PTPN20Q4JDL3 420 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 CHSY1Q86X52 802 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 ARFGAP1Q8N6T3 406 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 LHX5Q9H2C1 402 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 C10orf88Q9H8K7 445 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 AS3MTQ9HBK9 375 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 SLC17A7Q9P2U7 560 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 XPO7Q9UIA9 1087 aaKnown RBP21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 DCTN4Q9UJW0 460 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 GOLGB1Q14789 3259 aaKnown RBP21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 IGKV6D-21A0A0A0MT36 114 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 CCDC22O60826 627 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 RXRBP28702 533 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 EFNA5P52803 228 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 TMEM132BQ14DG7 1078 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 RFWD2Q8NHY2 731 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 MRPL4Q9BYD3 311 aaKnown RBP21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 DCLRE1BQ9H816 532 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 ZFATQ9P243 1243 aa21.06■□□□□ 0.96
SYNGAP1-227ENST00000638142 IQANK1A0A1B0GTG1 560 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 APOC4-APOC2K7ER74 178 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 TGDSO95455 350 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 APOC2P02655 101 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 MT-ND3P03897 115 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 WEE2P0C1S8 567 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 CALRP27797 417 aaKnown RBP21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 TARBP2Q15633 366 aaKnown RBP21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 STXBP2Q15833 593 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 KCNT1Q5JUK3 1230 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 DENND1BQ6P3S1 775 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 JOSD2Q8TAC2 188 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 TCHPQ9BT92 498 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 TSSK1BQ9BXA7 367 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 TCRBV7S3A2A0A539 114 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 GOLGA8RI6L899 631 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 HAUS5O94927 633 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 DHRS4L1P0CG22 281 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 ASPAP45381 313 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 ZNF699Q32M78 642 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 UNC45BQ8IWX7 931 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 ZNF280CQ8ND82 737 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 WDR35Q9P2L0 1181 aa21.05■□□□□ 0.96
SYNGAP1-227ENST00000638142 OGTO15294 1046 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 MED7O43513 233 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 MSCO60682 206 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 LPXNO60711 386 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 DNAJC6O75061 913 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 OVGP1Q12889 678 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 ZBTB33Q86T24 672 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 C12orf42Q96LP6 360 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 MIPEPQ99797 713 aa21.04■□□□□ 0.96
SYNGAP1-227ENST00000638142 NRBP2Q9NSY0 501 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms