RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 EPHX3Q9H6B9 360 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 CYP3A43Q9HB55 503 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 ABCB6Q9NP58 842 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 PLCB1Q9NQ66 1216 aa10.5□□□□□ -0.73
CLN3-261ENST00000637686 AVENQ9NQS1 362 aaPredicted RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 MRPS23Q9Y3D9 190 aaKnown RBP10.5□□□□□ -0.73
CLN3-261ENST00000637686 A0A1W2PQJ5 194 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ZNF197O14709 1029 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 TEX33O43247 280 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 GJA1P17302 382 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 CEBPBP17676 345 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 CD58P19256 250 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 BDNFP23560 247 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 TBX2Q13207 712 aaPredicted RBP10.49□□□□□ -0.73
CLN3-261ENST00000637686 VEPH1Q14D04 833 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 MAPRE1Q15691 268 aaKnown RBP10.49□□□□□ -0.73
CLN3-261ENST00000637686 DDR2Q16832 855 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 EXOC3L4Q17RC7 722 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 CFAP221Q4G0U5 840 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 GBP6Q6ZN66 633 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ACOT1Q86TX2 421 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ITIH5Q86UX2 942 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 TMC8Q8IU68 726 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 FMNL3Q8IVF7 1028 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 SCN4BQ8IWT1 228 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 NPAS3Q8IXF0 933 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 B3GALNT2Q8NCR0 500 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 STKLD1Q8NE28 680 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ST13P5Q8NFI4 369 aaPredicted RBP10.49□□□□□ -0.73
CLN3-261ENST00000637686 FGF13Q92913 245 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 MCRS1Q96EZ8 462 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 FUBP3Q96I24 572 aaKnown RBP eCLIP10.49□□□□□ -0.73
CLN3-261ENST00000637686 LRRC3Q9BY71 257 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 B3GNT5Q9BYG0 378 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ZNF334Q9HCZ1 680 aaPredicted RBP10.49□□□□□ -0.73
CLN3-261ENST00000637686 ASAH2Q9NR71 780 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 EPS15L1Q9UBC2 864 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 HMGXB4Q9UGU5 601 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 CDH7Q9ULB5 785 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 SIK3Q9Y2K2 1263 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 ASB3Q9Y575 518 aa10.49□□□□□ -0.73
CLN3-261ENST00000637686 TTC28Q96AY4 2481 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 PI4K2BG5E9Z4 385 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 CLDN5O00501 218 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 DCXO43602 365 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 MOSPD3O75425 235 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 GRIK1P39086 918 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 MAGEA11P43364 429 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 EPHA5P54756 1037 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 RPL10AP62906 217 aaKnown RBP10.48□□□□□ -0.73
CLN3-261ENST00000637686 INCA1Q0VD86 236 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 LRMPQ12912 555 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 MTMR3Q13615 1198 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 ARID5BQ14865 1188 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 TEAD2Q15562 447 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 TAF12Q16514 161 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 HS1BP3Q53T59 392 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 POTEHQ6S545 545 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 UNC93AQ86WB7 457 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 LEMD2Q8NC56 503 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 TNIP3Q96KP6 325 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 TWNKQ96RR1 684 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 ARID3AQ99856 593 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 ZNF518BQ9C0D4 1074 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 TTYH3Q9C0H2 523 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 NUCKS1Q9H1E3 243 aaKnown RBP10.48□□□□□ -0.73
CLN3-261ENST00000637686 FAM124BQ9H5Z6 455 aaPredicted RBP10.48□□□□□ -0.73
CLN3-261ENST00000637686 KCNK12Q9HB15 430 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 MYO6Q9UM54 1294 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 ZFP37Q9Y6Q3 630 aaPredicted RBP10.48□□□□□ -0.73
CLN3-261ENST00000637686 DOCK8Q8NF50 2099 aa10.48□□□□□ -0.73
CLN3-261ENST00000637686 MYO10Q9HD67 2058 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 A0A1W2PRU2 124 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 SLC38A8A6NNN8 435 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 PES1O00541 588 aaKnown RBP10.47□□□□□ -0.73
CLN3-261ENST00000637686 CILPO75339 1184 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 MICAL2O94851 1124 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 TPM1P09493 284 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 ALADP13716 330 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CCDC130P13994 396 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 GABRR2P28476 465 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CACNA2D1P54289 1103 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 KCNMA1Q12791 1236 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CUL2Q13617 745 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 SYCP1Q15431 976 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 PTPN21Q16825 1174 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 ZNF394Q53GI3 561 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 PARM1Q6UWI2 310 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 VSTM1Q6UX27 236 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 PAQR9Q6ZVX9 377 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 GAREM2Q75VX8 874 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CNGA4Q8IV77 575 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CRYBG2Q8N1P7 616 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 C12orf29Q8N999 325 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 LMO3Q8TAP4 145 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 SHKBP1Q8TBC3 707 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 WHAMMQ8TF30 809 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 RSAD2Q8WXG1 361 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 ZSWIM3Q96MP5 696 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 MED10Q9BTT4 135 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms