RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PITPNM1O00562 1244 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DNALI1O14645 258 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TM9SF1O15321 606 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MT-ND3P03897 115 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CHRNB2P17787 502 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 NPTX2P47972 431 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ALDH5A1P51649 535 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 HSD17B4P51659 736 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ARSEP51690 589 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SNX16P57768 344 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 RASA2Q15283 850 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 HIF1AQ16665 826 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CAPRIN2Q6IMN6 1127 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DRICH1Q6PGQ1 229 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CBWD2Q8IUF1 395 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MYLIPQ8WY64 445 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TOX2Q96NM4 488 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TMEM237Q96Q45 408 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FERMT1Q9BQL6 677 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FAM213AQ9BRX8 229 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 HEMGNQ9BXL5 484 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DEFB129Q9H1M3 183 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 EBF2Q9HAK2 575 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PCDH9Q9HC56 1237 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SPATS2LQ9NUQ6 558 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FETUBQ9UGM5 382 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DRG1Q9Y295 367 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 UBIAD1Q9Y5Z9 338 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MYH9P35579 1960 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MCF2LO15068 1137 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CCDC22O60826 627 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 DIAPH2O60879 1101 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 HAUS5O94927 633 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 IFNB1P01574 187 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 HLA-DRAP01903 254 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ATP5BP06576 529 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 INHBAP08476 426 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GEMIN4P57678 1058 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 GPS1Q13098 491 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 BIRC2Q13490 618 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CUL2Q13617 745 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PSMD6Q15008 389 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 FAM47EQ6ZV65 393 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SV2AQ7L0J3 742 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF467Q7Z7K2 595 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PHLDB2Q86SQ0 1253 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PALB2Q86YC2 1186 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PHF13Q86YI8 300 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 CPXCR1Q8N123 301 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MAB21L3Q8N8X9 362 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 TAS1R2Q8TE23 839 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SREK1Q8WXA9 508 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PSPC1Q8WXF1 523 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ERP27Q96DN0 273 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 KREMEN1Q96MU8 473 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 LRMDAQ9H2I8 198 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 VCX3BQ9H321 246 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 SEPT9Q9UHD8 586 aaPredicted RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ANGPTL2Q9UKU9 493 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 PHTF1Q9UMS5 762 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ZNF232Q9UNY5 417 aa4.18□□□□□ -1.74
SCN1A-214ENST00000637038 MTO1Q9Y2Z2 717 aaKnown RBP4.18□□□□□ -1.74
SCN1A-214ENST00000637038 ADM5C9JUS6 153 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 PPP1R12AO14974 1030 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 TBC1D12O60347 775 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 ADRB2P07550 413 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 P4HA1P13674 534 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 EIF2AK2P19525 551 aaKnown RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 RRM1P23921 792 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 MARK3P27448 753 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 YARSP54577 528 aaKnown RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 DLG4P78352 724 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 IRX4P78413 519 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 SF3A3Q12874 501 aaKnown RBP eCLIP4.17□□□□□ -1.742e-17■■■■■ 37.8
SCN1A-214ENST00000637038 SLC45A4Q5BKX6 768 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 KAZNQ674X7 775 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 ATG16L1Q676U5 607 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 RGS9BPQ6ZS82 235 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 FAM83AQ86UY5 434 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 PPIL6Q8IXY8 311 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 ABRAQ8N0Z2 381 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 RBBP8NLQ8NC74 664 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 ARMC2Q8NEN0 867 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 HELQQ8TDG4 1101 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 SLC7A3Q8WY07 619 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 HAUS1Q96CS2 278 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 STAMBPL1Q96FJ0 436 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 BTBD6Q96KE9 485 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 C9orf72Q96LT7 481 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 NUDCD1Q96RS6 583 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 RMDN3Q96TC7 470 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 CYTH2Q99418 400 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 FAM96AQ9H5X1 160 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 ARHGEF3Q9NR81 526 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 NRBP2Q9NSY0 501 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 DNAJC17Q9NVM6 304 aaKnown RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 WDR35Q9P2L0 1181 aa4.17□□□□□ -1.74
SCN1A-214ENST00000637038 AGO2Q9UKV8 859 aaKnown RBP4.17□□□□□ -1.74
SCN1A-214ENST00000637038 CLRN2A0PK11 232 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms