RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 LRRC52Q8N7C0 313 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 OR6B3Q8NGW1 331 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 YY1AP1Q9H869 796 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 GOLGA2P5Q9HBQ8 144 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 AAASQ9NRG9 546 aa16.46■□□□□ 0.23
CLN3-251ENST00000636853 DNAJC17Q9NVM6 304 aaKnown RBP16.46■□□□□ 0.23
CLN3-251ENST00000636853 UBQLN1Q9UMX0 589 aaKnown RBP16.46■□□□□ 0.23
CLN3-251ENST00000636853 PDCD11Q14690 1871 aaKnown RBP16.46■□□□□ 0.23
CLN3-251ENST00000636853 C3orf70A6NLC5 250 aaPredicted RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 FAM155AB1AL88 458 aaPredicted RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 GRAP2O75791 330 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 INHBEP58166 350 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 COPS2P61201 443 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 SOWAHAQ2M3V2 549 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 RHBDF2Q6PJF5 856 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 FAM183BPQ6ZVS7 135 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 POLNQ7Z5Q5 900 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 TTC30AQ86WT1 665 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 C10orf67Q8IYJ2 551 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 PWWP2AQ96N64 755 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 ARHGAP39Q9C0H5 1083 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 DPEP3Q9H4B8 488 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 NOVA2Q9UNW9 492 aaKnown RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 DCDC2CA8MYV0 355 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 SPTLC1O15269 473 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 CD48P09326 243 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 NUDT17P0C025 328 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 RARGP13631 454 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 MIPP30301 263 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 EIF3BP55884 814 aaKnown RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 DYNLT1P63172 113 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 BYSLQ13895 437 aaKnown RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 SLMAPQ14BN4 828 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 TAF5Q15542 800 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 HADHQ16836 314 aaKnown RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 SH3PXD2AQ5TCZ1 1133 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 TRNP1Q6NT89 227 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 GLIS1Q8NBF1 620 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 ARRDC4Q8NCT1 418 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 FAM124BQ9H5Z6 455 aaPredicted RBP16.45■□□□□ 0.22
CLN3-251ENST00000636853 ANAPC5Q9UJX4 755 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 ZNF148Q9UQR1 794 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 IPPQ9Y573 584 aa16.45■□□□□ 0.22
CLN3-251ENST00000636853 RIPK2O43353 540 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 KRT7P08729 469 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 GNAT1P11488 350 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 SOX4Q06945 474 aaPredicted RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 RAB6CQ53S08 254 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 GNASQ5JWF2 1037 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 PMF1Q6P1K2 205 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 FAM129AQ9BZQ8 928 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 RAB6CQ9H0N0 254 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 RABEP2Q9H5N1 569 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 SAE1Q9UBE0 346 aaPredicted RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 SMIM23A6NLE4 172 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 PIRO00625 290 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 TRIM66O15016 1216 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 CAND2O75155 1236 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 DUSP11O75319 330 aaKnown RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 RNF8O76064 485 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 PGK1P00558 417 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 PDGFRBP09619 1106 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 ZSCAN5DPP0CG00 497 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 ETS1P14921 441 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 KLRC2P26717 231 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 HOXC8P31273 242 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 PTPN7P35236 360 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 GUCY1A3Q02108 690 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 FBXO47Q5MNV8 452 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 ZNF618Q5T7W0 954 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 TWF2Q6IBS0 349 aaKnown RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 CXCL17Q6UXB2 119 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 FAM228AQ86W67 206 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 CCDC89Q8N998 374 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 SMG8Q8ND04 991 aaKnown RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 HSPH1Q92598 858 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 DDX23Q9BUQ8 820 aaKnown RBP16.44■□□□□ 0.22
CLN3-251ENST00000636853 GABRQQ9UN88 632 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 GRIN2DO15399 1336 aa16.44■□□□□ 0.22
CLN3-251ENST00000636853 TLDC2A0PJX2 215 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 A8MXQ7 604 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 FGFR1P11362 822 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 KDELR1P24390 212 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 STILQ15468 1287 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 C15orf59Q2T9L4 293 aaPredicted RBP16.43■□□□□ 0.22
CLN3-251ENST00000636853 PKDCCQ504Y2 493 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 AGBL2Q5U5Z8 902 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 FOXR1Q6PIV2 292 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 NME8Q8N427 588 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 RXFP2Q8WXD0 754 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 TRAIPQ9BWF2 469 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 CDC42EP4Q9H3Q1 356 aaKnown RBP16.43■□□□□ 0.22
CLN3-251ENST00000636853 USP18Q9UMW8 372 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 C2CD4BA6NLJ0 364 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 KPNA7A9QM74 516 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 CD4P01730 458 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 PDGFRAP16234 1089 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 GPD1P21695 349 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 LMO2P25791 158 aa16.43■□□□□ 0.22
CLN3-251ENST00000636853 ZNF143P52747 638 aaPredicted RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms