RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ENO1P06733 434 aaKnown RBP11.32□□□□□ -0.6
UPF3A-212ENST00000619079 DHRS4L1P0CG22 281 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 CBX3Q13185 183 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 HIC1Q14526 733 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 ADRM1Q16186 407 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 USH1GQ495M9 461 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 EFHC1Q5JVL4 640 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 DRICH1Q6PGQ1 229 aaPredicted RBP11.32□□□□□ -0.6
UPF3A-212ENST00000619079 RFX8Q6ZV50 586 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 SH3BP5LQ7L8J4 393 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 ZNF720Q7Z2F6 126 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 RHOT1Q8IXI2 618 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 RSPH1Q8WYR4 309 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 PRR11Q96HE9 360 aaPredicted RBP11.32□□□□□ -0.6
UPF3A-212ENST00000619079 TEPSINQ96N21 525 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 FZD1Q9UP38 647 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 SORCS3Q9UPU3 1222 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 ZNF536O15090 1300 aa11.32□□□□□ -0.6
UPF3A-212ENST00000619079 hCG_2014768A0A024R1R8 64 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM221A6NGB7 291 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 I3L4J1 428 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 BIRC5O15392 142 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 LPXNO60711 386 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 CLPTM1O96005 669 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 IDO1P14902 403 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 VAMP7P51809 220 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 TMED1Q13445 227 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 COG2Q14746 738 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 PRR16Q569H4 304 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 DCAF15Q66K64 600 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 TTC7BQ86TV6 843 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 KATNAL2Q8IYT4 538 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ICA1LQ8NDH6 482 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 SHC3Q92529 594 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 HERPUD2Q9BSE4 406 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 DHRS4Q9BTZ2 278 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 KCND2Q9NZV8 630 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ARMCX1Q9P291 453 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ITGB1BP2Q9UKP3 347 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 DDX60LQ5H9U9 1706 aaKnown RBP11.31□□□□□ -0.6
UPF3A-212ENST00000619079 C15orf38-AP3S2A0A0A6YYH1 394 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 VILLO15195 856 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 CYP26A1O43174 497 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 USP1O94782 785 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 FDX1P10109 184 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 CYP11B1P15538 503 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ZFXP17010 805 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-212ENST00000619079 STIP1P31948 543 aaKnown RBP11.31□□□□□ -0.6
UPF3A-212ENST00000619079 CPA2P48052 419 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 UGT2A3Q6UWM9 527 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 RBM44Q6ZP01 1051 aaKnown RBP11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ARPINQ7Z6K5 226 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 PCGF5Q86SE9 256 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 SLC47A2Q86VL8 602 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 EXD1Q8NHP7 514 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 PAFAH2Q99487 392 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 HEMGNQ9BXL5 484 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 ACSS3Q9H6R3 686 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.31□□□□□ -0.6
UPF3A-212ENST00000619079 SERPINB13Q9UIV8 391 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 SOX13Q9UN79 622 aa11.31□□□□□ -0.6
UPF3A-212ENST00000619079 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MT-ND3P03897 115 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 SLURP2P0DP57 97 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 TSHRP16473 764 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CD151P48509 253 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CYP4A11Q02928 519 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 FASTKD3Q14CZ7 662 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 BORAQ6PGQ7 559 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 C1orf186Q6ZWK4 172 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CROCCP3Q8IVE0 287 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 NUP93Q8N1F7 819 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 LRRC47Q8N1G4 583 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 C2orf69Q8N8R5 385 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM174Q8WUU8 243 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 ABTB1Q969K4 478 aaPredicted RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MRRFQ96E11 262 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 APOPT1Q96IL0 206 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 C7orf26Q96N11 449 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 UIMC1Q96RL1 719 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MRPS26Q9BYN8 205 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 USP29Q9HBJ7 922 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 TMEM165Q9HC07 324 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 TUFT1Q9NNX1 390 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 SLC17A7Q9P2U7 560 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 PPARGC1AQ9UBK2 798 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 RABGEF1Q9UJ41 708 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 POLR2AP24928 1970 aaKnown RBP11.3□□□□□ -0.6
UPF3A-212ENST00000619079 IQANK1A0A1B0GTG1 560 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 SFI1A8K8P3 1242 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 LIASO43766 372 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 PROSCO94903 275 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 OR6B1O95007 311 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 CDK4P11802 303 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GTF2H1P32780 548 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 MXI1P50539 228 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 ARSEP51690 589 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 PHEXP78562 749 aa11.3□□□□□ -0.6
UPF3A-212ENST00000619079 GPS1Q13098 491 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms