RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MCRS1Q96EZ8 462 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 RIPOR3Q96MK2 946 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 CBX8Q9HC52 389 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 MUTYHQ9UIF7 546 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 MUC6Q6W4X9 2439 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 CFHP08603 1231 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 GBP2P32456 591 aaPredicted RBP14.35□□□□□ -0.11
LINC00540-202ENST00000616974 MTHFRP42898 656 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 ZNF165P49910 485 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 WDR44Q5JSH3 913 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 PSMG2Q969U7 264 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 SMOQ99835 787 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 SMG9Q9H0W8 520 aaKnown RBP14.35□□□□□ -0.11
LINC00540-202ENST00000616974 KRT82Q9NSB4 513 aa14.35□□□□□ -0.11
LINC00540-202ENST00000616974 C1RP00736 705 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 FSHRP23945 695 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 ALDH1A3P47895 512 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 TEAD2Q15562 447 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 TMEM270Q6UE05 265 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 CRYBG2Q8N1P7 616 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 NT5C1BQ96P26 610 aa14.34□□□□□ -0.11
LINC00540-202ENST00000616974 UBE2TQ9NPD8 197 aaPredicted RBP14.34□□□□□ -0.11
LINC00540-202ENST00000616974 MAGEC2Q9UBF1 373 aaPredicted RBP14.34□□□□□ -0.11
LINC00540-202ENST00000616974 NUP210Q8TEM1 1887 aaPredicted RBP14.34□□□□□ -0.11
LINC00540-202ENST00000616974 BECN2A8MW95 431 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 PMM2O15305 246 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 TEX33O43247 280 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 XYLBO75191 536 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 FGFR1OPO95684 399 aaKnown RBP14.33□□□□□ -0.11
LINC00540-202ENST00000616974 GRIK1P39086 918 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 NFE2Q16621 373 aaPredicted RBP14.33□□□□□ -0.11
LINC00540-202ENST00000616974 ARHGAP44Q17R89 818 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 IER5LQ5T953 404 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 PARM1Q6UWI2 310 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 RNF135Q8IUD6 432 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 SPATA18Q8TC71 538 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 FAM200AQ8TCP9 573 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 NT5C1AQ9BXI3 368 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 OXCT2Q9BYC2 517 aaPredicted RBP14.33□□□□□ -0.11
LINC00540-202ENST00000616974 DPP7Q9UHL4 492 aa14.33□□□□□ -0.11
LINC00540-202ENST00000616974 MRPS23Q9Y3D9 190 aaKnown RBP14.33□□□□□ -0.11
LINC00540-202ENST00000616974 CACNA1HO95180 2353 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 HELZP42694 1942 aaKnown RBP14.33□□□□□ -0.12
LINC00540-202ENST00000616974 P4HA1P13674 534 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 PTPN2P17706 415 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 GABRR2P28476 465 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 EPHB3P54753 998 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 MAP3K7CLP57077 242 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 EXOC3L4Q17RC7 722 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 RIN3Q8TB24 985 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 RSPRY1Q96DX4 576 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 CYFIP2Q96F07 1278 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 ZNF512Q96ME7 567 aaPredicted RBP14.33□□□□□ -0.12
LINC00540-202ENST00000616974 SLC22A12Q96S37 553 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 MED10Q9BTT4 135 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 CYP3A43Q9HB55 503 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 TICRRQ7Z2Z1 1910 aa14.33□□□□□ -0.12
LINC00540-202ENST00000616974 SLC38A8A6NNN8 435 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 NARSO43776 548 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 AP1G2O75843 785 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 LAMP2P13473 410 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 BRD2P25440 801 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 COPB1P53618 953 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 PUS10Q3MIT2 529 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 CLEC20AQ6ZU45 233 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 TTC30AQ86WT1 665 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 HEXIM2Q96MH2 286 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 NECTIN4Q96NY8 510 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 PLA2G2FQ9BZM2 168 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 GPR88Q9GZN0 384 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 ASAH2Q9NR71 780 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 FHOD1Q9Y613 1164 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 ZNF318Q5VUA4 2279 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 P4HA2O15460 535 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 NOL4O94818 638 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 EEF1GP26641 437 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 TUFMP49411 452 aaKnown RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 EPHA5P54756 1037 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 TXNDC8Q6A555 127 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 C4orf50Q6ZRC1 276 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 PDZD4Q76G19 769 aaPredicted RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 UNC93AQ86WB7 457 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 CCDC150Q8NCX0 1101 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 TMEM176AQ96HP8 235 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 FUBP3Q96I24 572 aaKnown RBP eCLIP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 NAP1L5Q96NT1 182 aaPredicted RBP14.32□□□□□ -0.12
LINC00540-202ENST00000616974 LRRC3BQ96PB8 259 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 EPHX3Q9H6B9 360 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 PCDHB4Q9Y5E5 795 aa14.32□□□□□ -0.12
LINC00540-202ENST00000616974 HHLA1C9JL84 531 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 VIPR2P41587 438 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 CT47A1Q5JQC4 288 aaPredicted RBP14.31□□□□□ -0.12
LINC00540-202ENST00000616974 IQCEQ6IPM2 695 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 GBP6Q6ZN66 633 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 TDRD5Q8NAT2 981 aaKnown RBP14.31□□□□□ -0.12
LINC00540-202ENST00000616974 C2orf15Q8WU43 125 aaKnown RBP14.31□□□□□ -0.12
LINC00540-202ENST00000616974 NDRG1Q92597 394 aaKnown RBP14.31□□□□□ -0.12
LINC00540-202ENST00000616974 TNIP3Q96KP6 325 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 CYP2S1Q96SQ9 504 aa14.31□□□□□ -0.12
LINC00540-202ENST00000616974 KXD1Q9BQD3 176 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms