RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 FAM149B1Q96BN6 582 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 OXNAD1Q96HP4 312 aaPredicted RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 PDCD2LQ9BRP1 358 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 MECRQ9BV79 373 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 MIS12Q9H081 205 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 CYP26B1Q9NR63 512 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 IRAK4Q9NWZ3 460 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 FIS1Q9Y3D6 152 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 PDGFRAP16234 1089 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 OSBPP22059 807 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ZNF568Q3ZCX4 644 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 TLDC1Q6P9B6 456 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 TTC7BQ86TV6 843 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ALYREFQ86V81 257 aaKnown RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 SPATA24Q86W54 205 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ALLCQ8N6M5 410 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 CERKQ8TCT0 537 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 UCMAQ8WVF2 138 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 FAM151AQ8WW52 585 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ATG4CQ96DT6 458 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 FIZ1Q96SL8 496 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 CISHQ9NSE2 258 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 ASNSD1Q9NWL6 643 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 LGALS13Q9UHV8 139 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 SLC4A7Q9Y6M7 1214 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 MAGEA13PA6NCF6 341 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 C2CD2LO14523 706 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 SMNDC1O75940 238 aaKnown RBP eCLIP13.16□□□□□ -0.31e-10■■■□□ 18.1
LIG1-221ENST00000613670 MTA2O94776 668 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 GARTP22102 1010 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 NRLP54845 237 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 GAD2Q05329 585 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 C1QBPQ07021 282 aaKnown RBP13.16□□□□□ -0.3
LIG1-221ENST00000613670 RNF149Q8NC42 400 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 OR5B17Q8NGF7 314 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 FAXDC2Q96IV6 333 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 COL20A1Q9P218 1284 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 NUB1Q9Y5A7 615 aa13.16□□□□□ -0.3
LIG1-221ENST00000613670 UMODL1Q5DID0 1318 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 KIF3CO14782 793 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 PFDN1O60925 122 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 ZC3H11AO75152 810 aaKnown RBP eCLIP13.15□□□□□ -0.32e-8■■■■□ 25.1
LIG1-221ENST00000613670 AVILO75366 819 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 RPL22P35268 128 aaKnown RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 RAP1GAPP47736 663 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 MCL1Q07820 350 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 MED21Q13503 144 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 SIX1Q15475 284 aaPredicted RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 XKR3Q5GH77 459 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 ANKRD22Q5VYY1 191 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 ANO5Q75V66 913 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.15□□□□□ -0.3
LIG1-221ENST00000613670 CDHR1Q96JP9 859 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 CLPTM1LQ96KA5 538 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 SCYL1Q96KG9 808 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 SRPK1Q96SB4 655 aaKnown RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 RFC1P35251 1148 aaPredicted RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 ACTR2P61160 394 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 CDK16Q00536 496 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 MMEL1Q495T6 779 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 GALNTL6Q49A17 601 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 C4orf50Q6ZRC1 276 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 TRIM50Q86XT4 487 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 PPCSQ9HAB8 311 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 SAR1AQ9NR31 198 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 PIH1D1Q9NWS0 290 aaKnown RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 HESX1Q9UBX0 185 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 NENFQ9UMX5 172 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 ALOX15BO15296 676 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 STK10O94804 968 aaKnown RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 ABHD2P08910 425 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 CAP2P40123 477 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 CADM1Q9BY67 442 aaKnown RBP13.15□□□□□ -0.3
LIG1-221ENST00000613670 NIF3L1Q9GZT8 377 aa13.15□□□□□ -0.3
LIG1-221ENST00000613670 ATP8B3O60423 1300 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 RGL2O15211 777 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 TM9SF1O15321 606 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 GSC2O15499 205 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 HSPA4LO95757 839 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 NOVP48745 357 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 PSEN1P49768 467 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 PGM5Q15124 567 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 TXNRD3NBQ6F5E7 133 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 LRRC71Q8N4P6 559 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 ABTB1Q969K4 478 aaPredicted RBP13.14□□□□□ -0.31
LIG1-221ENST00000613670 SYT11Q9BT88 431 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 GLI3P10071 1580 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 PDE5AO76074 875 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 ACVR2BQ13705 512 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 CCDC14Q49A88 953 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 IRGCQ6NXR0 463 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 NPNTQ6UXI9 565 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 AEBP2Q6ZN18 517 aaPredicted RBP13.14□□□□□ -0.31
LIG1-221ENST00000613670 RAPH1Q70E73 1250 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 DNAAF3Q8N9W5 541 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 GSDMBQ8TAX9 411 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 MIPOL1Q8TD10 442 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 NMUR2Q9GZQ4 415 aa13.14□□□□□ -0.31
LIG1-221ENST00000613670 DHX35Q9H5Z1 703 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms