RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 BCAR1P56945 870 aa15.06■□□□□ 0
USP39-220ENST00000613444 YWHAHQ04917 246 aaPredicted RBP15.06■□□□□ 0
USP39-220ENST00000613444 LRRTM3Q86VH5 581 aa15.06■□□□□ 0
USP39-220ENST00000613444 LRRN4CLQ8ND94 238 aa15.06■□□□□ 0
USP39-220ENST00000613444 CD101Q93033 1021 aa15.06■□□□□ 0
USP39-220ENST00000613444 COLEC11Q9BWP8 271 aa15.06■□□□□ 0
USP39-220ENST00000613444 DUSP16Q9BY84 665 aa15.06■□□□□ 0
USP39-220ENST00000613444 TMEM30AQ9NV96 361 aa15.06■□□□□ 0
USP39-220ENST00000613444 TMLHEQ9NVH6 421 aa15.06■□□□□ 0
USP39-220ENST00000613444 WDR35Q9P2L0 1181 aa15.06■□□□□ 0
USP39-220ENST00000613444 PATJQ8NI35 1801 aa15.06■□□□□ 0
USP39-220ENST00000613444 SIGLEC16A6NMB1 481 aa15.05■□□□□ 0
USP39-220ENST00000613444 NT5C1B-RDH14C9J2C7 533 aa15.05■□□□□ 0
USP39-220ENST00000613444 SYN3O14994 580 aa15.05■□□□□ 0
USP39-220ENST00000613444 TRAPPC3O43617 180 aa15.05■□□□□ 0
USP39-220ENST00000613444 CXCR5P32302 372 aa15.05■□□□□ 0
USP39-220ENST00000613444 PLA2G4AP47712 749 aa15.05■□□□□ 0
USP39-220ENST00000613444 ZNF252P-AS1Q0IIN9 211 aa15.05■□□□□ 0
USP39-220ENST00000613444 MRPL58Q14197 206 aaKnown RBP15.05■□□□□ 0
USP39-220ENST00000613444 DNAJC24Q6P3W2 148 aa15.05■□□□□ 0
USP39-220ENST00000613444 CREG2Q8IUH2 290 aa15.05■□□□□ 0
USP39-220ENST00000613444 BADQ92934 168 aa15.05■□□□□ 0
USP39-220ENST00000613444 PSMB7Q99436 277 aa15.05■□□□□ 0
USP39-220ENST00000613444 AMFRQ9UKV5 643 aa15.05■□□□□ 0
USP39-220ENST00000613444 DDX3YO15523 660 aaKnown RBP15.05■□□□□ -0
USP39-220ENST00000613444 CAPN15O75808 1086 aa15.05■□□□□ -0
USP39-220ENST00000613444 NPR3P17342 541 aa15.05■□□□□ -0
USP39-220ENST00000613444 TCP1P17987 556 aaKnown RBP15.05■□□□□ -0
USP39-220ENST00000613444 FGFR3P22607 806 aa15.05■□□□□ -0
USP39-220ENST00000613444 CDR1P51861 262 aa15.05■□□□□ -0
USP39-220ENST00000613444 EPHB4P54760 987 aa15.05■□□□□ -0
USP39-220ENST00000613444 OGDHQ02218 1023 aa15.05■□□□□ -0
USP39-220ENST00000613444 RPS6KA1Q15418 735 aa15.05■□□□□ -0
USP39-220ENST00000613444 CLEC20AQ6ZU45 233 aa15.05■□□□□ -0
USP39-220ENST00000613444 OTOP2Q7RTS6 562 aa15.05■□□□□ -0
USP39-220ENST00000613444 FAM35AQ86V20 835 aa15.05■□□□□ -0
USP39-220ENST00000613444 MSANTD4Q8NCY6 345 aa15.05■□□□□ -0
USP39-220ENST00000613444 PIWIL1Q96J94 861 aaKnown RBP15.05■□□□□ -0
USP39-220ENST00000613444 ST7Q9NRC1 585 aa15.05■□□□□ -0
USP39-220ENST00000613444 TMEM110-MUSTN1A8MSY1 372 aa15.04■□□□□ -0
USP39-220ENST00000613444 MYO1FO00160 1098 aa15.04■□□□□ -0
USP39-220ENST00000613444 PIK3R2O00459 728 aa15.04■□□□□ -0
USP39-220ENST00000613444 XPO1O14980 1071 aaKnown RBP15.04■□□□□ -0
USP39-220ENST00000613444 CACNA2D1P54289 1103 aa15.04■□□□□ -0
USP39-220ENST00000613444 VARS2Q5ST30 1063 aaKnown RBP15.04■□□□□ -0
USP39-220ENST00000613444 FUT10Q6P4F1 479 aa15.04■□□□□ -0
USP39-220ENST00000613444 FAM183BPQ6ZVS7 135 aa15.04■□□□□ -0
USP39-220ENST00000613444 THEM5Q8N1Q8 247 aa15.04■□□□□ -0
USP39-220ENST00000613444 ZMIZ2Q8NF64 920 aa15.04■□□□□ -0
USP39-220ENST00000613444 MYRIPQ8NFW9 859 aa15.04■□□□□ -0
USP39-220ENST00000613444 JOSD2Q8TAC2 188 aa15.04■□□□□ -0
USP39-220ENST00000613444 IPO4Q8TEX9 1081 aaKnown RBP15.04■□□□□ -0
USP39-220ENST00000613444 KHSRPQ92945 711 aaKnown RBP eCLIP15.04■□□□□ -0
USP39-220ENST00000613444 MYLPFQ96A32 169 aa15.04■□□□□ -0
USP39-220ENST00000613444 MCEEQ96PE7 176 aa15.04■□□□□ -0
USP39-220ENST00000613444 CARD6Q9BX69 1037 aa15.04■□□□□ -0
USP39-220ENST00000613444 SYNCQ9H7C4 482 aa15.04■□□□□ -0
USP39-220ENST00000613444 CYLDQ9NQC7 956 aa15.04■□□□□ -0
USP39-220ENST00000613444 SF3B1O75533 1304 aaKnown RBP eCLIP15.04■□□□□ -03e-9■■■■■ 206.8
USP39-220ENST00000613444 GOLGA8SH3BPF8 625 aa15.04■□□□□ -0
USP39-220ENST00000613444 PAPSS1O43252 624 aaPredicted RBP15.04■□□□□ -0
USP39-220ENST00000613444 PROSCO94903 275 aa15.04■□□□□ -0
USP39-220ENST00000613444 RFC1P35251 1148 aaPredicted RBP15.04■□□□□ -0
USP39-220ENST00000613444 TAP1Q03518 808 aa15.04■□□□□ -0
USP39-220ENST00000613444 PPIGQ13427 754 aaKnown RBP eCLIP15.04■□□□□ -04e-7■■□□□ 13.9
USP39-220ENST00000613444 WHAMMP3Q1A5X7 153 aa15.04■□□□□ -0
USP39-220ENST00000613444 FAM171A1Q5VUB5 890 aa15.04■□□□□ -0
USP39-220ENST00000613444 OLFML1Q6UWY5 402 aa15.04■□□□□ -0
USP39-220ENST00000613444 ZNF365Q70YC5 407 aa15.04■□□□□ -0
USP39-220ENST00000613444 PIGZQ86VD9 579 aa15.04■□□□□ -0
USP39-220ENST00000613444 RNF168Q8IYW5 571 aaPredicted RBP15.04■□□□□ -0
USP39-220ENST00000613444 HSFY1Q96LI6 401 aa15.04■□□□□ -0
USP39-220ENST00000613444 SMOQ99835 787 aa15.04■□□□□ -0
USP39-220ENST00000613444 KRT82Q9NSB4 513 aa15.04■□□□□ -0
USP39-220ENST00000613444 PDE2AO00408 941 aaPredicted RBP15.03■□□□□ -0
USP39-220ENST00000613444 SLU7O95391 586 aaKnown RBP15.03■□□□□ -0
USP39-220ENST00000613444 KRT3P12035 628 aa15.03■□□□□ -0
USP39-220ENST00000613444 PEX5P50542 639 aa15.03■□□□□ -0
USP39-220ENST00000613444 DNA2P51530 1060 aa15.03■□□□□ -0
USP39-220ENST00000613444 FPGSQ05932 587 aa15.03■□□□□ -0
USP39-220ENST00000613444 DCAF12L1Q5VU92 463 aa15.03■□□□□ -0
USP39-220ENST00000613444 FAM117BQ6P1L5 589 aa15.03■□□□□ -0
USP39-220ENST00000613444 TAS1R1Q7RTX1 841 aa15.03■□□□□ -0
USP39-220ENST00000613444 C7orf61Q8IZ16 206 aa15.03■□□□□ -0
USP39-220ENST00000613444 ALG3Q92685 438 aa15.03■□□□□ -0
USP39-220ENST00000613444 KRT35Q92764 455 aa15.03■□□□□ -0
USP39-220ENST00000613444 B3GALT6Q96L58 329 aa15.03■□□□□ -0
USP39-220ENST00000613444 SELENOOQ9BVL4 669 aa15.03■□□□□ -0
USP39-220ENST00000613444 VN1R3Q9BXE9 311 aa15.03■□□□□ -0
USP39-220ENST00000613444 RHOBTB2Q9BYZ6 727 aa15.03■□□□□ -0
USP39-220ENST00000613444 ZCWPW1Q9H0M4 648 aa15.03■□□□□ -0
USP39-220ENST00000613444 CSNK1G1Q9HCP0 422 aa15.03■□□□□ -0
USP39-220ENST00000613444 METTL5Q9NRN9 209 aaKnown RBP15.03■□□□□ -0
USP39-220ENST00000613444 PRKAG2Q9UGJ0 569 aa15.03■□□□□ -0
USP39-220ENST00000613444 TMEM59LQ9UK28 342 aa15.03■□□□□ -0
USP39-220ENST00000613444 FAM200BP0CF97 657 aa15.02■□□□□ -0
USP39-220ENST00000613444 MARCKSL1P49006 195 aa15.02■□□□□ -0
USP39-220ENST00000613444 DAB2IPQ5VWQ8 1189 aa15.02■□□□□ -0
USP39-220ENST00000613444 TRNP1Q6NT89 227 aa15.02■□□□□ -0
USP39-220ENST00000613444 SCUBE3Q8IX30 993 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms