RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SPATA17Q96L03 361 aa27.8■■■□□ 2.04
PNKP-216ENST00000601816 KIF9Q9HAQ2 790 aa27.8■■■□□ 2.04
PNKP-216ENST00000601816 MAPK8IP1Q9UQF2 711 aa27.8■■■□□ 2.04
PNKP-216ENST00000601816 A8MXQ7 604 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 PTPN1P18031 435 aaKnown RBP27.79■■■□□ 2.04
PNKP-216ENST00000601816 ANXA13P27216 316 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 ZC3H14Q6PJT7 736 aaKnown RBP27.79■■■□□ 2.04
PNKP-216ENST00000601816 GUF1Q8N442 669 aaKnown RBP27.79■■■□□ 2.04
PNKP-216ENST00000601816 USP13Q92995 863 aaPredicted RBP27.79■■■□□ 2.04
PNKP-216ENST00000601816 CEP295NLQ96MC4 621 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 DPEP3Q9H4B8 488 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 SMYD3Q9H7B4 428 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 TDP1Q9NUW8 608 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 FBXO4Q9UKT5 387 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 R4GN57 208 aa27.79■■■□□ 2.04
PNKP-216ENST00000601816 ZFHX2Q9C0A1 2572 aaPredicted RBP27.79■■■□□ 2.04
PNKP-216ENST00000601816 GOLGA6L4A6NEF3 574 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 TRIM66O15016 1216 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 VNN1O95497 513 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 NR2F2P24468 414 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 SOX9P48436 509 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 NFIL3Q16649 462 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 ZACNQ401N2 412 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 TRPC7Q9HCX4 862 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 GTSE1Q9NYZ3 720 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 CCL26Q9Y258 94 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 PATJQ8NI35 1801 aa27.78■■■□□ 2.04
PNKP-216ENST00000601816 DENND4CQ5VZ89 1909 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 MAPK13O15264 365 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 SCARA5Q6ZMJ2 495 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 RALGPS2Q86X27 583 aaPredicted RBP27.77■■■□□ 2.04
PNKP-216ENST00000601816 B3GALNT2Q8NCR0 500 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 TTC8Q8TAM2 541 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 ELOVL4Q9GZR5 314 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 CHRDQ9H2X0 955 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 SEMA4AQ9H3S1 761 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 LMAN1LQ9HAT1 526 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 F5P12259 2224 aa27.77■■■□□ 2.04
PNKP-216ENST00000601816 OBSL1O75147 1896 aa27.76■■■□□ 2.04
PNKP-216ENST00000601816 TRAV19A0A0A6YYK7 116 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 SPECC1L-ADORA2AF8WAN1 911 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 IKBKBO14920 756 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 P4HA1P13674 534 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 RPL13P26373 211 aaKnown RBP27.76■■■□□ 2.03
PNKP-216ENST00000601816 CTHP32929 405 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 VAMP7P51809 220 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 CDH8P55286 799 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 CSTF1Q05048 431 aaKnown RBP27.76■■■□□ 2.03
PNKP-216ENST00000601816 TNK2Q07912 1038 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 ZNF268Q14587 947 aaPredicted RBP27.76■■■□□ 2.03
PNKP-216ENST00000601816 ZNF528Q3MIS6 628 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 DENND5BQ6ZUT9 1274 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 SV2AQ7L0J3 742 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 FMR1NBQ8N0W7 255 aaPredicted RBP27.76■■■□□ 2.03
PNKP-216ENST00000601816 IER2Q9BTL4 223 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 GKN1Q9NS71 199 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 EHD2Q9NZN4 543 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 USP34Q70CQ2 3546 aa27.76■■■□□ 2.03
PNKP-216ENST00000601816 F8VP50 259 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 RAP1GAPP47736 663 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 MTAPQ13126 283 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 SGSM1Q2NKQ1 1148 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 ITPRIPL2Q3MIP1 535 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 ELMO3Q96BJ8 720 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 C8orf48Q96LL4 319 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 ZNF518BQ9C0D4 1074 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 CACNA1IQ9P0X4 2223 aa27.75■■■□□ 2.03
PNKP-216ENST00000601816 AKAP3O75969 853 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 CKMP06732 381 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 USP17L7P0C7H9 530 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 CHRNB1P11230 501 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 KRT13P13646 458 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 PIK3CAP42336 1068 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 PNOCQ13519 176 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 C1orf220Q5T0J3 134 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 CC2D1AQ6P1N0 951 aaPredicted RBP27.74■■■□□ 2.03
PNKP-216ENST00000601816 INTS8Q75QN2 995 aaKnown RBP27.74■■■□□ 2.03
PNKP-216ENST00000601816 FAM186BQ8IYM0 893 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 TAF4BQ92750 862 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 B3GNT5Q9BYG0 378 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 MYO15AQ9UKN7 3530 aa27.74■■■□□ 2.03
PNKP-216ENST00000601816 ATP8B3O60423 1300 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 PTPRDP23468 1912 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 CLDN5O00501 218 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 USP46P62068 366 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 FAM160A1Q05DH4 1040 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 LRRC32Q14392 662 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 ZCWPW2Q504Y3 356 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 TXNDC11Q6PKC3 985 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 TNIP3Q96KP6 325 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 FAM83CQ9BQN1 747 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 TTLL2Q9BWV7 592 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 SDCBP2Q9H190 292 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 PRMT8Q9NR22 394 aaPredicted RBP27.73■■■□□ 2.03
PNKP-216ENST00000601816 RMND1Q9NWS8 449 aa27.73■■■□□ 2.03
PNKP-216ENST00000601816 KIF26AQ9ULI4 1882 aaPredicted RBP27.72■■■□□ 2.03
PNKP-216ENST00000601816 HLA-DRAP01903 254 aa27.72■■■□□ 2.03
PNKP-216ENST00000601816 PSMC2P35998 433 aaKnown RBP27.72■■■□□ 2.03
PNKP-216ENST00000601816 NOP14P78316 857 aaKnown RBP27.72■■■□□ 2.03
PNKP-216ENST00000601816 ADAM9Q13443 819 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms