RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 WNT16Q9UBV4 365 aa20.58■□□□□ 0.89
UPF1-212ENST00000601689 PTPRDP23468 1912 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 NOL4O94818 638 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 PRKCSHP14314 528 aaPredicted RBP20.57■□□□□ 0.88
UPF1-212ENST00000601689 AVPR1AP37288 418 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 PPP3CCP48454 512 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 GPR15P49685 360 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 KCNH2Q12809 1159 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 DEPDC1BQ8WUY9 529 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 ELMO3Q96BJ8 720 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 MYRFLQ96LU7 910 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 NT5C1BQ96P26 610 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 SDCBP2Q9H190 292 aa20.57■□□□□ 0.88
UPF1-212ENST00000601689 APOBEC3GQ9HC16 384 aaKnown RBP20.57■□□□□ 0.88
UPF1-212ENST00000601689 ZNF334Q9HCZ1 680 aaPredicted RBP20.57■□□□□ 0.88
UPF1-212ENST00000601689 F8VP50 259 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 STK25O00506 426 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 RTN3O95197 1032 aaPredicted RBP20.56■□□□□ 0.88
UPF1-212ENST00000601689 PTMSP20962 102 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 MTIF2P46199 727 aaKnown RBP20.56■□□□□ 0.88
UPF1-212ENST00000601689 SLC8A3P57103 927 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 FAM78AQ5JUQ0 283 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 SDHAF4Q5VUM1 108 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 GAREM2Q75VX8 874 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 GPT2Q8TD30 523 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 SEMA4DQ92854 862 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 SHDQ96IW2 340 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 SLITRK1Q96PX8 696 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 KXD1Q9BQD3 176 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 B3GNT5Q9BYG0 378 aa20.56■□□□□ 0.88
UPF1-212ENST00000601689 DMAP1Q9NPF5 467 aaPredicted RBP20.56■□□□□ 0.88
UPF1-212ENST00000601689 DENND4CQ5VZ89 1909 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 MOSPD3O75425 235 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 AP1G2O75843 785 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CFHP08603 1231 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 HMGA1P17096 107 aaKnown RBP20.55■□□□□ 0.88
UPF1-212ENST00000601689 PSMC3P17980 439 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CCDC183Q5T5S1 534 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 FAM35AQ86V20 835 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 TRIM59Q8IWR1 403 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 NUP93Q8N1F7 819 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CYFIP2Q96F07 1278 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CNOT6LQ96LI5 555 aaKnown RBP20.55■□□□□ 0.88
UPF1-212ENST00000601689 FAM81BQ96LP2 452 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 HEXIM2Q96MH2 286 aaKnown RBP20.55■□□□□ 0.88
UPF1-212ENST00000601689 TRMT61BQ9BVS5 477 aaKnown RBP20.55■□□□□ 0.88
UPF1-212ENST00000601689 ZNF518BQ9C0D4 1074 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 THAP9Q9H5L6 903 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 TRPV4Q9HBA0 871 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 SLC2A4RGQ9NR83 387 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CISHQ9NSE2 258 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 TRPM5Q9NZQ8 1165 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 HCN4Q9Y3Q4 1203 aa20.55■□□□□ 0.88
UPF1-212ENST00000601689 CLDN5O00501 218 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 CILPO75339 1184 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 F11P03951 625 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 FAM200BP0CF97 657 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 CYP4F8P98187 520 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 CUL2Q13617 745 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 DPCR1Q3MIW9 517 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 TANGO2Q6ICL3 276 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 ARID3BQ8IVW6 561 aaPredicted RBP20.54■□□□□ 0.88
UPF1-212ENST00000601689 PDZD8Q8NEN9 1154 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 IRF7Q92985 503 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 TMEM176AQ96HP8 235 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 BRD9Q9H8M2 597 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 ANO10Q9NW15 660 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 THG1LQ9NWX6 298 aaKnown RBP20.54■□□□□ 0.88
UPF1-212ENST00000601689 COMMD8Q9NX08 183 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 OBP2AQ9NY56 170 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 NME7Q9Y5B8 376 aa20.54■□□□□ 0.88
UPF1-212ENST00000601689 GREB1Q4ZG55 1949 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 TRAV19A0A0A6YYK7 116 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 NARSO43776 548 aaKnown RBP20.53■□□□□ 0.88
UPF1-212ENST00000601689 TPM2P07951 284 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 PFKLP17858 780 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 WEE1P30291 646 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 GPC5P78333 572 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 LRMPQ12912 555 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 CCDC142Q17RM4 750 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 ZNF394Q53GI3 561 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 MFSD6LQ8IWD5 586 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 PPM1KQ8N3J5 372 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 FBXL6Q8N531 539 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 MAB21L3Q8N8X9 362 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 STKLD1Q8NE28 680 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 ST13P5Q8NFI4 369 aaPredicted RBP20.53■□□□□ 0.88
UPF1-212ENST00000601689 SLC2A14Q8TDB8 520 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 TATDN2Q93075 761 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 ASIC4Q96FT7 647 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 ZSWIM3Q96MP5 696 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 FBXO44Q9H4M3 255 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 KIF9Q9HAQ2 790 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 IL21Q9HBE4 155 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 KRT82Q9NSB4 513 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 FAM49BQ9NUQ9 324 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 NUP210Q8TEM1 1887 aaPredicted RBP20.53■□□□□ 0.88
UPF1-212ENST00000601689 TECTAO75443 2155 aa20.53■□□□□ 0.88
UPF1-212ENST00000601689 HEPACAM2A8MVW5 462 aa20.52■□□□□ 0.88
UPF1-212ENST00000601689 ZNF263O14978 683 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms