RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	BIN1	O00499	593 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	P4HA2	O15460	535 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	STX10	O60499	249 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	PHACTR2	O75167	634 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZDHHC11B	P0C7U3	371 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	GJA1	P17302	382 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	BDNF	P23560	247 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	GABRR2	P28476	465 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	PIK3CA	P42336	1068 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	RAP1GAP	P47736	663 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	FMO5	P49326	533 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	CLCN5	P51795	746 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	VCP	P55072	806 aa	Known RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MLLT6	P55198	1093 aa	Predicted RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	STARD6	P59095	220 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	RPL10A	P62906	217 aa	Known RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	PAK1	Q13153	545 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	TEAD2	Q15562	447 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	CAMK4	Q16566	473 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	DDR2	Q16832	855 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MGAT5B	Q3V5L5	792 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MDH1B	Q5I0G3	518 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SNX30	Q5VWJ9	437 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	CWF19L1	Q69YN2	538 aa	Known RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SMYD5	Q6GMV2	418 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ISM2	Q6H9L7	571 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	PHLDB3	Q6NSJ2	640 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	VIT	Q6UXI7	678 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SPATA2L	Q8IUW3	424 aa	Predicted RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MFSD6L	Q8IWD5	586 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MLKL	Q8NB16	471 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZMIZ2	Q8NF64	920 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	GPR152	Q8TDT2	470 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	TATDN2	Q93075	761 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	FAM122A	Q96E09	287 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MCRS1	Q96EZ8	462 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	TNIP3	Q96KP6	325 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SEPT5	Q99719	369 aa	Predicted RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SLC46A2	Q9BY10	475 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZNF518B	Q9C0D4	1074 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ELOVL4	Q9GZR5	314 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	SNX25	Q9H3E2	840 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	TASP1	Q9H6P5	420 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	GCNT4	Q9P109	453 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MAGEC2	Q9UBF1	373 aa	Predicted RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	FBXL21	Q9UKT6	434 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	R3HCC1	Q9Y3T6	440 aa	Known RBP	9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	MIA3	Q5JRA6	1907 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	FANCM	Q8IYD8	2048 aa		9.36	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZNF292	O60281	2723 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	SLC38A8	A6NNN8	435 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628		A8MXQ7	604 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	HHLA1	C9JL84	531 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	PRAMEF12	O95522	483 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	GNA14	O95837	355 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	OLFM2	O95897	454 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CFH	P08603	1231 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	MYL4	P12829	197 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	P4HA1	P13674	534 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	TCF3	P15923	654 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	PFKL	P17858	780 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	DDX6	P26196	483 aa	Known RBP eCLIP	9.35	□□□□□ -0.91	1e-6	■■■■□ 21.2
SSBP4-208	ENST00000600628	CDC25C	P30307	473 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	PLA2G5	P39877	138 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CDR1	P51861	262 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	NDST1	P52848	882 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	NUBP1	P53384	320 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	USP46	P62068	366 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	GPC5	P78333	572 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZNF268	Q14587	947 aa	Predicted RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	VEPH1	Q14D04	833 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CT47A1	Q5JQC4	288 aa	Predicted RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	SDHAF4	Q5VUM1	108 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	DPY19L2P1	Q6NXN4	242 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	MON1A	Q86VX9	555 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	ARID3B	Q8IVW6	561 aa	Predicted RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CMTM8	Q8IZV2	173 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	SIX5	Q8N196	739 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	KIAA1958	Q8N8K9	716 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	OR6B3	Q8NGW1	331 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	GIPC2	Q8TF65	315 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	E2F7	Q96AV8	911 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	HNRNPAB	Q99729	332 aa	Known RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	PRRX2	Q99811	253 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	SMO	Q99835	787 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	ARID3A	Q99856	593 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	KXD1	Q9BQD3	176 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	MFSD1	Q9H3U5	465 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	ZFP14	Q9HCL3	533 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	DLGAP2	Q9P1A6	1054 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	UXT	Q9UBK9	157 aa	Predicted RBP	9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CNTN6	Q9UQ52	1028 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628	CTNND2	Q9UQB3	1225 aa		9.35	□□□□□ -0.91
SSBP4-208	ENST00000600628		F8VP50	259 aa		9.34	□□□□□ -0.91
SSBP4-208	ENST00000600628	CLDN5	O00501	218 aa		9.34	□□□□□ -0.91
SSBP4-208	ENST00000600628	TRIM66	O15016	1216 aa		9.34	□□□□□ -0.91
SSBP4-208	ENST00000600628	BEST1	O76090	585 aa		9.34	□□□□□ -0.91
SSBP4-208	ENST00000600628	PSMC3	P17980	439 aa		9.34	□□□□□ -0.91
SSBP4-208	ENST00000600628	ACO1	P21399	889 aa	Known RBP	9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms