RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	HEBP1	Q9NRV9	189 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	FBXL5	Q9UKA1	691 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	MAFF	Q9ULX9	164 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	COL4A2	P08572	1712 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	WDR87	Q6ZQQ6	2873 aa		13.55	□□□□□ -0.24
UPF1-208	ENST00000600012	TICRR	Q7Z2Z1	1910 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	SCN1A	P35498	2009 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	AKR1B15	C9JRZ8	316 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	P4HA2	O15460	535 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	NOL4	O94818	638 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	IL18RAP	O95256	599 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	SEC24A	O95486	1093 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	C4BPA	P04003	597 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	NFIC	P08651	508 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TPM1	P09493	284 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	FCAR	P24071	287 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TFAM	Q00059	246 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	ADCY1	Q08828	1119 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	LRMP	Q12912	555 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	BIRC3	Q13489	604 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	FIGN	Q5HY92	759 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	CYP4A22	Q5TCH4	519 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TDRD10	Q5VZ19	366 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	IQCE	Q6IPM2	695 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	GJB7	Q6PEY0	223 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TRIM65	Q6PJ69	517 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	POTEH	Q6S545	545 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TMEM130	Q8N3G9	435 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TC2N	Q8N9U0	490 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	LEMD2	Q8NC56	503 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	ZBTB44	Q8NCP5	570 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	APPL2	Q8NEU8	664 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TAS1R2	Q8TE23	839 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	CACTIN	Q8WUQ7	758 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	SEMA4D	Q92854	862 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	C18orf25	Q96B23	403 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	TRIM44	Q96DX7	344 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	NUP58	Q9BVL2	599 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	MTMR12	Q9C0I1	747 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	KCNF1	Q9H3M0	494 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	BRD9	Q9H8M2	597 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	NLRC4	Q9NPP4	1024 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	ZSCAN32	Q9NX65	697 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	NCDN	Q9UBB6	729 aa		13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	AFF4	Q9UHB7	1163 aa	Known RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	AJAP1	Q9UKB5	411 aa	Predicted RBP	13.54	□□□□□ -0.24
UPF1-208	ENST00000600012	DMXL1	Q9Y485	3027 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	MAN2B1	O00754	1011 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	PMM2	O15305	246 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	VNN1	O95497	513 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	HLA-DRA	P01903	254 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	TMEM191B	P0C7N4	346 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	KRT9	P35527	623 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	PIK3CA	P42336	1068 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	POLR2F	P61218	127 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	CETN1	Q12798	172 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	GRM2	Q14416	872 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	ZACN	Q401N2	412 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	FAM78A	Q5JUQ0	283 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	SCARA3	Q6AZY7	606 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	JADE1	Q6IE81	842 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	GPIHBP1	Q8IV16	184 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	GPR161	Q8N6U8	529 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	EHBP1	Q8NDI1	1231 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	FBXL13	Q8NEE6	735 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	LMO3	Q8TAP4	145 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	NELL1	Q92832	810 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	IRF7	Q92985	503 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	SECISBP2L	Q93073	1101 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	ELMO3	Q96BJ8	720 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	TCEAL4	Q96EI5	215 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	ZNF512	Q96ME7	567 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	ASB16	Q96NS5	453 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	TRMT61B	Q9BVS5	477 aa	Known RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	FAM126A	Q9BYI3	521 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	PLCB1	Q9NQ66	1216 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	PRMT8	Q9NR22	394 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	DLL3	Q9NYJ7	618 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	CAPN11	Q9UMQ6	739 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	PCDHB8	Q9UN66	801 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	FHOD1	Q9Y613	1164 aa		13.53	□□□□□ -0.24
UPF1-208	ENST00000600012	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
UPF1-208	ENST00000600012		A0A1W2PQJ5	194 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	LILRB5	O75023	590 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	PHACTR2	O75167	634 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	CPB1	P15086	417 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	CCR2	P41597	374 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	EPHA5	P54756	1037 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	POU5F1	Q01860	360 aa	Known RBP	13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	FZD5	Q13467	585 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	TMEM132D	Q14C87	1099 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	KLHDC7A	Q5VTJ3	777 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	TRAPPC11	Q7Z392	1133 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	CACNA2D4	Q7Z3S7	1137 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	CNGA4	Q8IV77	575 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	ARHGEF19	Q8IW93	802 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	LRRC8A	Q8IWT6	810 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	DEPDC1B	Q8WUY9	529 aa		13.52	□□□□□ -0.25
UPF1-208	ENST00000600012	BAP1	Q92560	729 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms