RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 PTK2Q05397 1052 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 CBX2Q14781 532 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 SMAD2Q15796 467 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 CNGA2Q16280 664 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 ARHGAP44Q17R89 818 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 PAQR9Q6ZVX9 377 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 C12orf76Q8N812 135 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 C12orf29Q8N999 325 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 ANKRD52Q8NB46 1076 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 TRMT2BQ96GJ1 504 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 SPAG5Q96R06 1193 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 WDR6Q9NNW5 1121 aaKnown RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 UXTQ9UBK9 157 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 HESX1Q9UBX0 185 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 ZMYM5Q9UJ78 669 aa17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 USP15Q9Y4E8 981 aaPredicted RBP17.56■□□□□ 0.4
SHKBP1-219ENST00000599575 GRXCR2A6NFK2 248 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 CCDC172P0C7W6 258 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 CD19P15391 556 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 NPR3P17342 541 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 ATF6P18850 670 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 POLR2FP61218 127 aaKnown RBP17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 RAPGEF1Q13905 1077 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 DRAP1Q14919 205 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 TAF12Q16514 161 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 CYP4A22Q5TCH4 519 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 PTCRAQ6ISU1 281 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 GJB7Q6PEY0 223 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 LCLAT1Q6UWP7 414 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 MYRFLQ96LU7 910 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 DUSP16Q9BY84 665 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF518BQ9C0D4 1074 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 ASAH2Q9NR71 780 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM49BQ9NUQ9 324 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 IFNKQ9P0W0 207 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 PRKAG3Q9UGI9 489 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 USTQ9Y2C2 406 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 FHOD1Q9Y613 1164 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 ZFP37Q9Y6Q3 630 aaPredicted RBP17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 PRUNE2Q8WUY3 3088 aa17.55■□□□□ 0.4
SHKBP1-219ENST00000599575 SOBPA7XYQ1 873 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 F8VZ95 297 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 O00370 1275 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 FOXN3O00409 490 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 CCL16O15467 120 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 AP1G2O75843 785 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 RTN3O95197 1032 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 SETSIPP0DME0 302 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 PBX1P40424 430 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 STAT1P42224 750 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 PPP3CCP48454 512 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 BCAT1P54687 386 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 JAM2P57087 298 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 APBA1Q02410 837 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 ORC1Q13415 861 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 PABPC1LQ4VXU2 614 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 PPP1R26Q5T8A7 1209 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 DENND5BQ6ZUT9 1274 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 CACNA2D4Q7Z3S7 1137 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 DNAJB7Q7Z6W7 309 aaPredicted RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 SCN4BQ8IWT1 228 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 TTC9BQ8N6N2 239 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 ASB2Q96Q27 587 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 NUCKS1Q9H1E3 243 aaKnown RBP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 KRT82Q9NSB4 513 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 PLXNA3P51805 1871 aa17.54■□□□□ 0.4
SHKBP1-219ENST00000599575 CLUHO75153 1309 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 ITIH6Q6UXX5 1313 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 MTCL1Q9Y4B5 1905 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 BRWD1Q9NSI6 2320 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 F8VP50 259 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 RNF225M0QZC1 329 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 CCDC130P13994 396 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 GNA15P30679 374 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 USP8P40818 1118 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 DDR2Q16832 855 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 CCDC142Q17RM4 750 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 ZNF677Q86XU0 584 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 TTLL2Q9BWV7 592 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 PHF7Q9BWX1 381 aaPredicted RBP17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 GPR88Q9GZN0 384 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 DNMT3BQ9UBC3 853 aaKnown RBP17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 TSPAN16Q9UKR8 245 aa17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.53■□□□□ 0.4
SHKBP1-219ENST00000599575 A0A1W2PQJ5 194 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 CLDN5O00501 218 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 RHOP08100 348 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 ADORA2BP29275 332 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 CDC25CP30307 473 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 SOX5P35711 763 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 KLK7P49862 253 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 TFF2Q03403 129 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 BST2Q10589 180 aaKnown RBP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 TRIM14Q14142 442 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 CLUL1Q15846 466 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 CLEC20AQ6ZU45 233 aa17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 PDZD4Q76G19 769 aaPredicted RBP17.52■□□□□ 0.4
SHKBP1-219ENST00000599575 OTOP3Q7RTS5 596 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms