RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 NELL1Q92832 810 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 IQCDQ96DY2 449 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 FAXDC2Q96IV6 333 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 UROC1Q96N76 676 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 BCO2Q9BYV7 579 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 ARHGEF3Q9NR81 526 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 SEMA4GQ9NTN9 838 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 GDAP2Q9NXN4 497 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 LUC7L2Q9Y383 392 aaKnown RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 DAAM1Q9Y4D1 1078 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 PDCD11Q14690 1871 aaKnown RBP10.08□□□□□ -0.8
TRIM28-208ENST00000597172 LOC400499M0QZD8 3231 aa10.08□□□□□ -0.8
TRIM28-208ENST00000597172 LRRC53A6NM62 1247 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 NRP1O14786 923 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 CLASP2O75122 1294 aaKnown RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 KIF4AO95239 1232 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 ALDH2P05091 517 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 PNMA6AP0CW24 399 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SRFP11831 508 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 HNRNPH3P31942 346 aaKnown RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 CLCN1P35523 988 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 PNPLA4P41247 253 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 BRCC3P46736 316 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 RAP1GAPP47736 663 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 OR1G1P47890 313 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SLC11A1P49279 550 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 AARSP49588 968 aaKnown RBP eCLIP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 MFAP3P55082 362 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 RAPGEF1Q13905 1077 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 CSRP2Q16527 193 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SOWAHAQ2M3V2 549 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 WDR59Q6PJI9 974 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 ENOSF1Q7L5Y1 443 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 CACNA2D4Q7Z3S7 1137 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 TMC7Q7Z402 723 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 IRF2BP2Q7Z5L9 587 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SLC44A3Q8N4M1 653 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 COLGALT1Q8NBJ5 622 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 OR8K1Q8NGG5 319 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 GPR152Q8TDT2 470 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 WHAMMQ8TF30 809 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SHC3Q92529 594 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SENP8Q96LD8 212 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF560Q96MR9 790 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 FAM193BQ96PV7 902 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 DNAJC7Q99615 494 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM175Q9BSA9 504 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 MRPL9Q9BYD2 267 aaKnown RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 IMPG2Q9BZV3 1241 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 NIF3L1Q9GZT8 377 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SMYD3Q9H7B4 428 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 ABHD10Q9NUJ1 306 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 DZANK1Q9NVP4 752 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 MARCH5Q9NX47 278 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 AIPL1Q9NZN9 384 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 MYO6Q9UM54 1294 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 CNTN6Q9UQ52 1028 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 R3HCC1Q9Y3T6 440 aaKnown RBP10.07□□□□□ -0.8
TRIM28-208ENST00000597172 NME7Q9Y5B8 376 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 SNX9Q9Y5X1 595 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 F5P12259 2224 aa10.07□□□□□ -0.8
TRIM28-208ENST00000597172 MIA3Q5JRA6 1907 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 NT5C1B-RDH14C9J2C7 533 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 F8VZ95 297 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM189-UBE2V1I3L0A0 370 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 I3L4J1 428 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 CYB561D2O14569 222 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TM4SF5O14894 197 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 FOXD2O60548 495 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 B3GAT3O94766 335 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TBXAS1P24557 533 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 SOX5P35711 763 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 PBX3P40426 434 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 BCAR1P56945 870 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 PLCB3Q01970 1234 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 SV2CQ496J9 727 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TMC5Q6UXY8 1006 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 SCARA5Q6ZMJ2 495 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 GPIHBP1Q8IV16 184 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM139Q8IV31 216 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 CNGA4Q8IV77 575 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 FAM71AQ8IYT1 594 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 LRRC43Q8N309 656 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 MRPL43Q8N983 215 aaKnown RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 ZNF397Q8NF99 534 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 BCL7CQ8WUZ0 217 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 ZCCHC14Q8WYQ9 949 aaKnown RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 SYN2Q92777 582 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 JAKMIP2Q96AA8 810 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 FAM81BQ96LP2 452 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 MRPL45Q9BRJ2 306 aaKnown RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 TMEM121BQ9BXQ6 578 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 CYP3A43Q9HB55 503 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 CISHQ9NSE2 258 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 L1RE1Q9UN81 338 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 FAN1Q9Y2M0 1017 aa10.06□□□□□ -0.8
TRIM28-208ENST00000597172 PRG3Q9Y2Y8 225 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 FNDC1Q4ZHG4 1894 aaPredicted RBP10.06□□□□□ -0.8
TRIM28-208ENST00000597172 C2orf71A6NGG8 1288 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms