RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PRMT8Q9NR22 394 aaPredicted RBP13.94□□□□□ -0.18
LIG1-212ENST00000596549 SPATA6Q9NWH7 488 aaPredicted RBP13.94□□□□□ -0.18
LIG1-212ENST00000596549 NXF1Q9UBU9 619 aaKnown RBP13.94□□□□□ -0.18
LIG1-212ENST00000596549 MAPK8IP1Q9UQF2 711 aa13.94□□□□□ -0.18
LIG1-212ENST00000596549 SPECC1L-ADORA2AF8WAN1 911 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 MAN2B1O00754 1011 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 DPYSL4O14531 572 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 CHRNB1P11230 501 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 DDX6P26196 483 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIG1-212ENST00000596549 CDH8P55286 799 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 USP4Q13107 963 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 NCOA4Q13772 614 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 GAS6Q14393 721 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 MAPRE1Q15691 268 aaKnown RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 NFIL3Q16649 462 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 ZNF699Q32M78 642 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 ZACNQ401N2 412 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 CEP135Q66GS9 1140 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 VSTM1Q6UX27 236 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 SMYD4Q8IYR2 804 aaPredicted RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 FMR1NBQ8N0W7 255 aaPredicted RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 GUF1Q8N442 669 aaKnown RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 CELF5Q8N6W0 485 aaKnown RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 TMC2Q8TDI7 906 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 MRPS31Q92665 395 aaKnown RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 MSANTD3Q96H12 275 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 SPATA17Q96L03 361 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 NELL2Q99435 816 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 ZNF518BQ9C0D4 1074 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 HPS4Q9NQG7 708 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 MAGEC2Q9UBF1 373 aaPredicted RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 UXTQ9UBK9 157 aaPredicted RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 HMGXB4Q9UGU5 601 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 ZMYM5Q9UJ78 669 aa13.93□□□□□ -0.18
LIG1-212ENST00000596549 MRPS17Q9Y2R5 130 aaKnown RBP13.93□□□□□ -0.18
LIG1-212ENST00000596549 C2orf78A6NCI8 922 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 OTOL1A6NHN0 477 aaPredicted RBP13.92□□□□□ -0.18
LIG1-212ENST00000596549 A8MXQ7 604 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 F8VP50 259 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 CLDN5O00501 218 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 LAMTOR5O43504 91 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 CALUO43852 315 aaPredicted RBP13.92□□□□□ -0.18
LIG1-212ENST00000596549 PHACTR2O75167 634 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 AKAP3O75969 853 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TRIM49P0CI25 452 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TRIM49CP0CI26 452 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TDGF1P13385 188 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 NR2F2P24468 414 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 GNL1P36915 607 aaPredicted RBP13.92□□□□□ -0.18
LIG1-212ENST00000596549 AVPR1AP37288 418 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 AP3M2P53677 418 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 MLLT6P55198 1093 aaPredicted RBP13.92□□□□□ -0.18
LIG1-212ENST00000596549 MTAPQ13126 283 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 PNOCQ13519 176 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 BECN1Q14457 450 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 ZNF77Q15935 545 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TRIM68Q6AZZ1 485 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 SPOPLQ6IQ16 392 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TSSK4Q6SA08 328 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 SV2AQ7L0J3 742 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 MON1AQ86VX9 555 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 B3GALNT2Q8NCR0 500 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 FAM83CQ9BQN1 747 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 TTLL2Q9BWV7 592 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 B3GNT5Q9BYG0 378 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 SNX25Q9H3E2 840 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 KIF9Q9HAQ2 790 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 RBM12Q9NTZ6 932 aaKnown RBP13.92□□□□□ -0.18
LIG1-212ENST00000596549 TDP1Q9NUW8 608 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 GCNT4Q9P109 453 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 FBXO4Q9UKT5 387 aa13.92□□□□□ -0.18
LIG1-212ENST00000596549 F5P12259 2224 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 SOBPA7XYQ1 873 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 TRIM66O15016 1216 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 MAPK13O15264 365 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 NCAM2O15394 837 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 ASS1P00966 412 aaKnown RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 FAM163BP0C2L3 166 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 PTPN1P18031 435 aaKnown RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 GRIK1P39086 918 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 ASPAP45381 313 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 KPNA1P52294 538 aaPredicted RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 PLCB2Q00722 1185 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 ZNF268Q14587 947 aaPredicted RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 ZNF528Q3MIS6 628 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 ZNF667Q5HYK9 610 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 Q6ZS52 159 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 DENND5BQ6ZUT9 1274 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 FAM35AQ86V20 835 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 ENGASEQ8NFI3 743 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 NELL1Q92832 810 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 CCDC47Q96A33 483 aaKnown RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 ELOVL4Q9GZR5 314 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 C8orf33Q9H7E9 229 aaPredicted RBP13.91□□□□□ -0.18
LIG1-212ENST00000596549 TRPC7Q9HCX4 862 aa13.91□□□□□ -0.18
LIG1-212ENST00000596549 CFAP54Q96N23 3096 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 CLSTN1O94985 981 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 HLA-DRAP01903 254 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 CKMP06732 381 aa13.9□□□□□ -0.18
LIG1-212ENST00000596549 ARSAP15289 507 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms