RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 KBTBD6Q86V97 674 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 KIAA1958Q8N8K9 716 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 C12orf50Q8NA57 414 aaPredicted RBP12.72□□□□□ -0.37
LIG3-209ENST00000586435 CD101Q93033 1021 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 ACDQ96AP0 544 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 ANKRD36BP1Q96IX9 119 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SPATA17Q96L03 361 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 SLC22A12Q96S37 553 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 ARRDC1-AS1Q9H2J1 176 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 FBRSL1Q9HCM7 1045 aaKnown RBP12.72□□□□□ -0.37
LIG3-209ENST00000586435 PANK4Q9NVE7 773 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 INTS13Q9NVM9 706 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 DUS2Q9NX74 493 aaKnown RBP12.72□□□□□ -0.37
LIG3-209ENST00000586435 ARHGAP26Q9UNA1 814 aa12.72□□□□□ -0.37
LIG3-209ENST00000586435 A0A087X0B3 334 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 TM4SF5O14894 197 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 AXIN1O15169 862 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 PRPF6O94906 941 aaKnown RBP12.71□□□□□ -0.37
LIG3-209ENST00000586435 SYT1P21579 422 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 IFNAR2P48551 515 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 PXNP49023 591 aaPredicted RBP12.71□□□□□ -0.37
LIG3-209ENST00000586435 KCNB1Q14721 858 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 SLC39A14Q15043 492 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 MAPRE1Q15691 268 aaKnown RBP12.71□□□□□ -0.37
LIG3-209ENST00000586435 CCDC142Q17RM4 750 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 EML3Q32P44 896 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 IL31Q6EBC2 164 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 STXBP4Q6ZWJ1 553 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 CCDC65Q8IXS2 484 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 CCDC26Q8TAB7 109 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 KBTBD7Q8WVZ9 684 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 EZH1Q92800 747 aaPredicted RBP12.71□□□□□ -0.37
LIG3-209ENST00000586435 FAM84AQ96KN4 292 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 SYT15Q9BQS2 421 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 TNMDQ9H2S6 317 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 PCIF1Q9H4Z3 704 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 TRPC7Q9HCX4 862 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 EBF1Q9UH73 591 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 CDH9Q9ULB4 789 aa12.71□□□□□ -0.37
LIG3-209ENST00000586435 R3HCC1Q9Y3T6 440 aaKnown RBP12.71□□□□□ -0.37
LIG3-209ENST00000586435 THADAQ6YHU6 1953 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 ABCA7Q8IZY2 2146 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 PTPRJQ12913 1337 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 ZNF233A6NK53 670 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 HCRTO43612 131 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 TNNC2P02585 160 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 WARSP23381 471 aaKnown RBP12.7□□□□□ -0.38
LIG3-209ENST00000586435 NR1H3Q13133 447 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 SF3A2Q15428 464 aaKnown RBP12.7□□□□□ -0.38
LIG3-209ENST00000586435 DUOXA2Q1HG44 320 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 PLK5Q496M5 336 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 NAIF1Q69YI7 327 aaPredicted RBP12.7□□□□□ -0.38
LIG3-209ENST00000586435 FAM173BQ6P4H8 233 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 WDR49Q8IV35 697 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 SCN4BQ8IWT1 228 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 ARL14EPQ8N8R7 260 aaPredicted RBP12.7□□□□□ -0.38
LIG3-209ENST00000586435 OR5B17Q8NGF7 314 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 RPLP0P6Q8NHW5 317 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 SH3RF2Q8TEC5 729 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 MYLPFQ96A32 169 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 HPDLQ96IR7 371 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 HHIPQ96QV1 700 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 USP28Q96RU2 1077 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 CYP2S1Q96SQ9 504 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 TTLL2Q9BWV7 592 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 LRRC27Q9C0I9 530 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 KIAA1586Q9HCI6 787 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 CRTAC1Q9NQ79 661 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 VPS45Q9NRW7 570 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 EHD2Q9NZN4 543 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 MAGEC2Q9UBF1 373 aaPredicted RBP12.7□□□□□ -0.38
LIG3-209ENST00000586435 WNT6Q9Y6F9 365 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 PLXND1Q9Y4D7 1925 aa12.7□□□□□ -0.38
LIG3-209ENST00000586435 MYOFQ9NZM1 2061 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 C2orf78A6NCI8 922 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 EIF3DO15371 548 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG3-209ENST00000586435 NFATC1O95644 943 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 APBB3O95704 486 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 OLFM2O95897 454 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 FAM163BP0C2L3 166 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 HDCP19113 662 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 LMO2P25791 158 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 MPLP40238 635 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 PPP3CCP48454 512 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 NASPP49321 788 aaPredicted RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 CEBPZQ03701 1054 aaKnown RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 DMC1Q14565 340 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 ELF2Q15723 593 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 LMBRD2Q68DH5 695 aaPredicted RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 DENND5BQ6ZUT9 1274 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 CBWD2Q8IUF1 395 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 INTS4Q96HW7 963 aaKnown RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 DUSP15Q9H1R2 295 aaPredicted RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 CUEDC2Q9H467 287 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 ZSCAN16Q9H4T2 348 aaPredicted RBP12.69□□□□□ -0.38
LIG3-209ENST00000586435 KBTBD4Q9NVX7 518 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 HSPBP1Q9NZL4 362 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 MTMR6Q9Y217 621 aa12.69□□□□□ -0.38
LIG3-209ENST00000586435 UBE4BO95155 1302 aa12.68□□□□□ -0.38
LIG3-209ENST00000586435 MYO18AQ92614 2054 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms