RNA–Protein interactions for RNA: ENST00000582114.5

CDK5RAP3-223, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 2

Gene CDK5RAP3, Length 647 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-223	ENST00000582114	MAGEC2	Q9UBF1	373 aa	Predicted RBP	12.45	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ZMYM5	Q9UJ78	669 aa		12.45	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SLC8A2	Q9UPR5	921 aa		12.45	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	RALGAPA1	Q6GYQ0	2036 aa		12.45	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	NCOR2	Q9Y618	2525 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	TRDMT1	O14717	391 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	USP17L7	P0C7H9	530 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CCDC192	P0DO97	292 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	TNNI1	P19237	187 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CNR2	P34972	360 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	GJA4	P35212	333 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	GRIK1	P39086	918 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	USP46	P62068	366 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FAM160A1	Q05DH4	1040 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	USP4	Q13107	963 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	PSMD2	Q13200	908 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ZNF268	Q14587	947 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	KCNB1	Q14721	858 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	PDGFRL	Q15198	375 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CFAP221	Q4G0U5	840 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	MDH1B	Q5I0G3	518 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FAM26F	Q5R3K3	315 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FAM171B	Q6P995	826 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SHC4	Q6S5L8	630 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	C4orf50	Q6ZRC1	276 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CPA6	Q8N4T0	437 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	RPLP0P6	Q8NHW5	317 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SH3RF2	Q8TEC5	729 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	OSCP1	Q8WVF1	389 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CCDC127	Q96BQ5	260 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FUBP3	Q96I24	572 aa	Known RBP eCLIP	12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	MYRFL	Q96LU7	910 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	P2RY13	Q9BPV8	354 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	MRPL45	Q9BRJ2	306 aa	Known RBP	12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	RTKN	Q9BST9	563 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	BLZF1	Q9H2G9	400 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	LINC00597	Q9H2U6	94 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ECT2	Q9H8V3	914 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	AGPAT3	Q9NRZ7	376 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	KBTBD4	Q9NVX7	518 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CDH9	Q9ULB4	789 aa		12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	MORC2	Q9Y6X9	1032 aa	Predicted RBP	12.44	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SDK1	Q7Z5N4	2213 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ANAPC1	Q9H1A4	1944 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SCAMP3	O14828	347 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	KIAA0391	O15091	583 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	EIF3D	O15371	548 aa	Known RBP eCLIP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	TGFB1I1	O43294	461 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	RPP40	O75818	363 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CLSTN1	O94985	981 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ABL1	P00519	1130 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CST3	P01034	146 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	HDC	P19113	662 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	IFRD2	Q12894	506 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SF3A2	Q15428	464 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SURF1	Q15526	300 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CSRP2	Q16527	193 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SNRNP35	Q16560	246 aa	Known RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	EPM2AIP1	Q7L775	607 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	HS2ST1	Q7LGA3	356 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	TRAPPC11	Q7Z392	1133 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	KBTBD6	Q86V97	674 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	WDR49	Q8IV35	697 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FSIP1	Q8NA03	581 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	OR6B3	Q8NGW1	331 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SPATA18	Q8TC71	538 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	NETO1	Q8TDF5	533 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	EZH1	Q92800	747 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ATP2A3	Q93084	1043 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ELMO3	Q96BJ8	720 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	PCED1B	Q96HM7	432 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ZNF396	Q96N95	335 aa	Predicted RBP	12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	FNBP1	Q96RU3	617 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	LRRC27	Q9C0I9	530 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ARRDC1-AS1	Q9H2J1	176 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SNX25	Q9H3E2	840 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	DPEP3	Q9H4B8	488 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SMOC1	Q9H4F8	434 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	GCNT4	Q9P109	453 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	NME7	Q9Y5B8	376 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SPTBN2	O15020	2390 aa		12.43	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ANTXRL	A6NF34	631 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114		F8VP50	259 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	POLR2D	O15514	142 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CUTA	O60888	179 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	LRP3	O75074	770 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ATG13	O75143	517 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	PPP6R2	O75170	966 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	DRD1	P21728	446 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	WARS	P23381	471 aa	Known RBP	12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ANXA13	P27216	316 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	HOXA6	P31267	233 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	GNL1	P36915	607 aa	Predicted RBP	12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	MAGEA11	P43364	429 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	AFM	P43652	599 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CASP4	P49662	377 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	CACNA2D1	P54289	1103 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	SEC13	P55735	322 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	ZXDB	P98169	803 aa		12.42	□□□□□ -0.42
CDK5RAP3-223	ENST00000582114	AMPD3	Q01432	767 aa		12.42	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms