RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 NSMCE1Q8WV22 266 aa4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 PTDSS2Q9BVG9 487 aa4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 TMX1Q9H3N1 280 aa4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 POLHQ9Y253 713 aa4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 PCDHA3Q9Y5H8 950 aa4.47□□□□□ -1.69
SMCHD1-206ENST00000581631 CADPSQ9ULU8 1353 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 A1L4Q6 167 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 USP1O94782 785 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 ZRANB2O95218 330 aaKnown RBP eCLIP4.46□□□□□ -1.72e-6■□□□□ 11.2
SMCHD1-206ENST00000581631 SMARCA1P28370 1054 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 RENBPP51606 427 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 HK3P52790 923 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 NOGQ13253 232 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 RBMS2Q15434 407 aaKnown RBP4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 ABCB5Q2M3G0 1257 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 SHC4Q6S5L8 630 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 TERB1Q8NA31 727 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 SOCS4Q8WXH5 440 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 R3HDM4Q96D70 268 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 FAM118BQ9BPY3 351 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 GLOD4Q9HC38 313 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 ATP8A1Q9Y2Q0 1164 aa4.46□□□□□ -1.7
SMCHD1-206ENST00000581631 ADAM10O14672 748 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 XPOTO43592 962 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 OAZ2O95190 189 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 PDE8BO95263 885 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 ATXN1LP0C7T5 689 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 HOXD9P28356 352 aaPredicted RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 THBS4P35443 961 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 RGS19P49795 217 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 LILRA4P59901 499 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 UAP1L1Q3KQV9 507 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 LONRF3Q496Y0 759 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 RNASE12Q5GAN4 147 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 ARHGAP40Q5TG30 622 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 SYDE2Q5VT97 1194 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 SMRP1Q8NCR6 262 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 TNPO1Q92973 898 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 TTYH3Q9C0H2 523 aa4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 NDRG4Q9ULP0 352 aaKnown RBP4.45□□□□□ -1.7
SMCHD1-206ENST00000581631 GABRDO14764 452 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 SLC16A6O15403 523 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 TOMM40O96008 361 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 AHSGP02765 367 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 GNAI2P04899 355 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 CSF1RP07333 972 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 TMEM191BP0C7N4 346 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 CDKN1CP49918 316 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 PDE1AP54750 535 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 TPTEP56180 551 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 ODF1Q14990 250 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 CYP1B1Q16678 543 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 CERKLQ49MI3 558 aaPredicted RBP4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 EMC10Q5UCC4 262 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 KIAA1161Q6NSJ0 714 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 MTHFD1LQ6UB35 978 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 C9orf47Q6ZRZ4 202 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 HEATR3Q7Z4Q2 680 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 ABHD11Q8NFV4 315 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 IGFBPL1Q8WX77 278 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 ASIC5Q9NY37 505 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 ABCF2Q9UG63 623 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 TRHDEQ9UKU6 1024 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 FER1L4A9Z1Z3 1794 aa4.44□□□□□ -1.7
SMCHD1-206ENST00000581631 ALPLP05186 524 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 MYBL2P10244 700 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 TYRP14679 529 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 PXNP49023 591 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 GPSM2P81274 684 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 TBC1D25Q3MII6 688 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 RGS7BPQ6MZT1 257 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 PRR18Q8N4B5 295 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 RBMXL3Q8N7X1 1067 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 WWOXQ9NZC7 414 aa4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 FEZ2Q9UHY8 353 aaPredicted RBP4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 TCF20Q9UGU0 1960 aaKnown RBP4.43□□□□□ -1.7
SMCHD1-206ENST00000581631 SHTN1A0MZ66 631 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 ABLIM3O94929 683 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 A1BGP04217 495 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 CDK11BP21127 795 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 FPR3P25089 353 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 GUCY2FP51841 1108 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 EVA1CP58658 441 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 AMPD3Q01432 767 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 EXOSC9Q06265 439 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 ERV3-1Q14264 604 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 FAM50AQ14320 339 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 IQCB1Q15051 598 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 CPA6Q8N4T0 437 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 PNISRQ8TF01 805 aaKnown RBP4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 EFHD1Q9BUP0 239 aa4.42□□□□□ -1.7
SMCHD1-206ENST00000581631 CD8B2A6NJW9 211 aa4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 UBE2Q2LH0YL09 131 aa4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 EXOC3O60645 756 aa4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 CNOT3O75175 753 aaKnown RBP4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 KATNA1O75449 491 aa4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 VIPR2P41587 438 aa4.41□□□□□ -1.7
SMCHD1-206ENST00000581631 HTR6P50406 440 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms