RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 CORO1BQ9BR76 489 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 MED10Q9BTT4 135 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 ELOVL4Q9GZR5 314 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 INTS2Q9H0H0 1204 aaKnown RBP11.73□□□□□ -0.53
CHD3-216ENST00000573936 CRISPLD1Q9H336 500 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 DPEP3Q9H4B8 488 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 ASAH2Q9NR71 780 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 CISHQ9NSE2 258 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 GCNT4Q9P109 453 aa11.73□□□□□ -0.53
CHD3-216ENST00000573936 ZFP37Q9Y6Q3 630 aaPredicted RBP11.73□□□□□ -0.53
CHD3-216ENST00000573936 RHOP08100 348 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 BDNFP23560 247 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 CYP2F1P24903 491 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 ANXA13P27216 316 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 GRIK1P39086 918 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 MFAP3P55082 362 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 PTPN21Q16825 1174 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 MIIPQ5JXC2 388 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 PDZD4Q76G19 769 aaPredicted RBP11.72□□□□□ -0.53
CHD3-216ENST00000573936 DNAJB7Q7Z6W7 309 aaPredicted RBP11.72□□□□□ -0.53
CHD3-216ENST00000573936 SCN4BQ8IWT1 228 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 TTC9BQ8N6N2 239 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 TDRD5Q8NAT2 981 aaKnown RBP11.72□□□□□ -0.53
CHD3-216ENST00000573936 TMEM176AQ96HP8 235 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 SPATA17Q96L03 361 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 B3GNT5Q9BYG0 378 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 EHD2Q9NZN4 543 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 CEP72Q9P209 647 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 LIMA1Q9UHB6 759 aaKnown RBP11.72□□□□□ -0.53
CHD3-216ENST00000573936 KIAA1257Q9ULG3 409 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 NME7Q9Y5B8 376 aa11.72□□□□□ -0.53
CHD3-216ENST00000573936 LRRC10BA6NIK2 292 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 SOAT2O75908 522 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 GBP2P32456 591 aaPredicted RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 EPHA5P54756 1037 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 VCPP55072 806 aaKnown RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 NCAPHQ15003 741 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 KRT31Q15323 416 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 ZNF394Q53GI3 561 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 FKBP15Q5T1M5 1219 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 TRIM65Q6PJ69 517 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 ZDHHC14Q8IZN3 488 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 WHAMMQ8TF30 809 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 GIPC2Q8TF65 315 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 ASIC4Q96FT7 647 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 SMARCD1Q96GM5 515 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 C8orf48Q96LL4 319 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 HEXIM2Q96MH2 286 aaKnown RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 HNRNPABQ99729 332 aaKnown RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 CRACR2AQ9BSW2 395 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 VPS16Q9H269 839 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 UBE2TQ9NPD8 197 aaPredicted RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 HCFC1R1Q9NWW0 138 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 TAB2Q9NYJ8 693 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 UXTQ9UBK9 157 aaPredicted RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 MRPS23Q9Y3D9 190 aaKnown RBP11.71□□□□□ -0.53
CHD3-216ENST00000573936 PCDHB4Q9Y5E5 795 aa11.71□□□□□ -0.53
CHD3-216ENST00000573936 SLC38A8A6NNN8 435 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 CLDN5O00501 218 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 PAEPP09466 180 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 MYL4P12829 197 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ZNF18P17022 549 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ATF6P18850 670 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 SLC9A1P19634 815 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 PON1P27169 355 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 CDC25CP30307 473 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 CDR1P51861 262 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 RAD23BP54727 409 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ZNF445P59923 1031 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 NTHL1P78549 312 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 DDR2Q16832 855 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 PHLDB3Q6NSJ2 640 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 RRAGAQ7L523 313 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 GET4Q7L5D6 327 aaPredicted RBP11.7□□□□□ -0.54
CHD3-216ENST00000573936 FAM35AQ86V20 835 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ARHGEF19Q8IW93 802 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 DHX40Q8IX18 779 aaKnown RBP11.7□□□□□ -0.54
CHD3-216ENST00000573936 UBALD2Q8IYN6 164 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 HS6ST3Q8IZP7 471 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 SLC4A11Q8NBS3 891 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 FEZF2Q8TBJ5 459 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 NXPE3Q969Y0 559 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 CYFIP2Q96F07 1278 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 GCNAQ96QF7 691 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 TWNKQ96RR1 684 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ARID3AQ99856 593 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 LPIN3Q9BQK8 851 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 GPR88Q9GZN0 384 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 MFSD1Q9H3U5 465 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 GDE1Q9NZC3 331 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 APEX2Q9UBZ4 518 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 HMGXB4Q9UGU5 601 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 ZMYM5Q9UJ78 669 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 CDH7Q9ULB5 785 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 DAAM1Q9Y4D1 1078 aa11.7□□□□□ -0.54
CHD3-216ENST00000573936 C2CD4DB7Z1M9 353 aa11.69□□□□□ -0.54
CHD3-216ENST00000573936 GOLGA6L19H0YKK7 550 aa11.69□□□□□ -0.54
CHD3-216ENST00000573936 GALR2O43603 387 aaPredicted RBP11.69□□□□□ -0.54
CHD3-216ENST00000573936 AP1G2O75843 785 aa11.69□□□□□ -0.54
CHD3-216ENST00000573936 NOL4O94818 638 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms