RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 TDP1Q9NUW8 608 aa13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 TRAF3IP3Q9Y228 551 aa13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 CCL26Q9Y258 94 aa13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 NME7Q9Y5B8 376 aa13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 COL4A2P08572 1712 aa13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 NUP210Q8TEM1 1887 aaPredicted RBP13.55□□□□□ -0.24
NPLOC4-213ENST00000573519 MIA3Q5JRA6 1907 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 SPECC1L-ADORA2AF8WAN1 911 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 TRIM66O15016 1216 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 TADA3O75528 432 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 VNN1O95497 513 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 CKMP06732 381 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 P4HA1P13674 534 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 PIK3CAP42336 1068 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 RPS9P46781 194 aaKnown RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 VAMP7P51809 220 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 CLDN10P78369 228 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 PLCB2Q00722 1185 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 IFRD2Q12894 506 aaPredicted RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 PNOCQ13519 176 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 KCNB1Q14721 858 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 CC2D1AQ6P1N0 951 aaPredicted RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 DENND5BQ6ZUT9 1274 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 SMYD4Q8IYR2 804 aaPredicted RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 MAML2Q8IZL2 1156 aaPredicted RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 B3GALNT2Q8NCR0 500 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 TMC2Q8TDI7 906 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 TMEM174Q8WUU8 243 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 SPATA17Q96L03 361 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 MYRFLQ96LU7 910 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 CYP2S1Q96SQ9 504 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 MED10Q9BTT4 135 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 MMRN2Q9H8L6 949 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 GKN1Q9NS71 199 aa13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
NPLOC4-213ENST00000573519 MYO15AQ9UKN7 3530 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 TRAV19A0A0A6YYK7 116 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 F8VP50 259 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 CLDN5O00501 218 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ABL1P00519 1130 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 FAM163BP0C2L3 166 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 USP17L7P0C7H9 530 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 TRIM49P0CI25 452 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 TRIM49CP0CI26 452 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 KRT13P13646 458 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 RPL13P26373 211 aaKnown RBP13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 MTAPQ13126 283 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ADAM9Q13443 819 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 FZD5Q13467 585 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 PON2Q15165 354 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 SGSM1Q2NKQ1 1148 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ITPRIPL2Q3MIP1 535 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 TRIM68Q6AZZ1 485 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 C1orf228Q6PIY5 440 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 TSSK4Q6SA08 328 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 SV2AQ7L0J3 742 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 RALGPS2Q86X27 583 aaPredicted RBP13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 FAM186BQ8IYM0 893 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 GUF1Q8N442 669 aaKnown RBP13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ENGASEQ8NFI3 743 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ERCC4Q92889 916 aaPredicted RBP13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 MSANTD3Q96H12 275 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ZNF518BQ9C0D4 1074 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 ELOVL4Q9GZR5 314 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 VRTNQ9H8Y1 702 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 KIF9Q9HAQ2 790 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 RMND1Q9NWS8 449 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 EHD2Q9NZN4 543 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 FBXO4Q9UKT5 387 aa13.53□□□□□ -0.24
NPLOC4-213ENST00000573519 C2orf78A6NCI8 922 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 SOBPA7XYQ1 873 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 IKBKBO14920 756 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 GADD45BO75293 160 aaPredicted RBP13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 AKAP3O75969 853 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 HLA-DRAP01903 254 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 CTHP32929 405 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 PSMC2P35998 433 aaKnown RBP13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 CACNA2D1P54289 1103 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 MLLT6P55198 1093 aaPredicted RBP13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 USP46P62068 366 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 FAM160A1Q05DH4 1040 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 ORC1Q13415 861 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 LRRC32Q14392 662 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 ZACNQ401N2 412 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 SPOPLQ6IQ16 392 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 TXNDC11Q6PKC3 985 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 INTS8Q75QN2 995 aaKnown RBP13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 ADSSL1Q8N142 457 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 ZNF687Q8N1G0 1237 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 ARL14EPQ8N8R7 260 aaPredicted RBP13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 TNIP3Q96KP6 325 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 C8orf48Q96LL4 319 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 SLC22A12Q96S37 553 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 B3GNT5Q9BYG0 378 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 IMPG2Q9BZV3 1241 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 SDCBP2Q9H190 292 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 CHRDQ9H2X0 955 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 EBF3Q9H4W6 596 aa13.52□□□□□ -0.25
NPLOC4-213ENST00000573519 RBM12Q9NTZ6 932 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms