RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TAF4BQ92750 862 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ATOH1Q92858 354 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 SMARCD2Q92925 531 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 E2F7Q96AV8 911 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ELSPBP1Q96BH3 223 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 TCEAL4Q96EI5 215 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 FUBP3Q96I24 572 aaKnown RBP eCLIP8.66□□□□□ -1.02
VPS53-214ENST00000572607 TIGD1Q96MW7 591 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 GSDMAQ96QA5 445 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 LPIN3Q9BQK8 851 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 IMPG2Q9BZV3 1241 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 DNAI2Q9GZS0 605 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 IRF2BPLQ9H1B7 796 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 DNAJC25Q9H1X3 360 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 ARHGEF3Q9NR81 526 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 DMAC2Q9NW81 257 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 MAGEC2Q9UBF1 373 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 ZMYM5Q9UJ78 669 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 GTF3C4Q9UKN8 822 aa8.66□□□□□ -1.02
VPS53-214ENST00000572607 MTCL1Q9Y4B5 1905 aaKnown RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 KMT2BQ9UMN6 2715 aaPredicted RBP8.66□□□□□ -1.02
VPS53-214ENST00000572607 ATP8B3O60423 1300 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 A8MXQ7 604 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 GABRDO14764 452 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 IKBKBO14920 756 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CETN3O15182 167 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 ZBTB24O43167 697 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 STX10O60499 249 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 TACC1O75410 805 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CST3P01034 146 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 PDGFRBP09619 1106 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 EPB41P11171 864 aaKnown RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 GJA1P17302 382 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 ATF6P18850 670 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 GNL1P36915 607 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 PPP1R2P41236 205 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CCR2P41597 374 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 PIK3CAP42336 1068 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CLCN5P51795 746 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 MYL6P60660 151 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 PSMC1P62191 440 aaKnown RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 GPC5P78333 572 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 FOXK2Q01167 660 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CYP27A1Q02318 531 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 SGSM1Q2NKQ1 1148 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 EDRF1Q3B7T1 1238 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CFAP221Q4G0U5 840 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 FAM78AQ5JUQ0 283 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 ZNF658Q5TYW1 1059 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 TDRD10Q5VZ19 366 aaKnown RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 TREML4Q6UXN2 200 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 TMC8Q8IU68 726 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 SCN4BQ8IWT1 228 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 SMYD4Q8IYR2 804 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 ENGASEQ8NFI3 743 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 SHKBP1Q8TBC3 707 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 GIPC2Q8TF65 315 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 DEPDC1BQ8WUY9 529 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 KBTBD7Q8WVZ9 684 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 MYLPFQ96A32 169 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 ASB16Q96NS5 453 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 RPP25Q9BUL9 199 aaKnown RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 TRMT61BQ9BVS5 477 aaKnown RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 BRD9Q9H8M2 597 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 TMLHEQ9NVH6 421 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 EHD2Q9NZN4 543 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 CHMP5Q9NZZ3 219 aa8.65□□□□□ -1.02
VPS53-214ENST00000572607 UXTQ9UBK9 157 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 MAGED2Q9UNF1 606 aaPredicted RBP8.65□□□□□ -1.02
VPS53-214ENST00000572607 DOCK8Q8NF50 2099 aa8.65□□□□□ -1.03
VPS53-214ENST00000572607 EP300Q09472 2414 aaPredicted RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 MYBPHLA2RUH7 354 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PSMA7O14818 248 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 TRIM66O15016 1216 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MOSPD3O75425 235 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 AKAP3O75969 853 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 C4BPAP04003 597 aaKnown RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 PSMC3P17980 439 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 AOC1P19801 751 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 CYP2F1P24903 491 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 DDX6P26196 483 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS53-214ENST00000572607 AVPR1AP37288 418 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 GRIK1P39086 918 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 SMCPP49901 116 aaPredicted RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 CDR1P51861 262 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 CLDN10P78369 228 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PLCB2Q00722 1185 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PRKCQQ04759 706 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 ENPEPQ07075 957 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MLF2Q15773 248 aaPredicted RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 DDR2Q16832 855 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 ZACNQ401N2 412 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 MDH1BQ5I0G3 518 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 GPR158Q5T848 1215 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 LCE2AQ5TA79 106 aaPredicted RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 CWF19L1Q69YN2 538 aaKnown RBP8.64□□□□□ -1.03
VPS53-214ENST00000572607 TANGO2Q6ICL3 276 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 PHLDB3Q6NSJ2 640 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 VSTM1Q6UX27 236 aa8.64□□□□□ -1.03
VPS53-214ENST00000572607 ELOA2Q8IYF1 753 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms