RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 TMEM121BQ9BXQ6 578 aaPredicted RBP20.6■□□□□ 0.89
NUP88-203ENST00000572019 PCNX2A6NKB5 2137 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 ZFYVE26Q68DK2 2539 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 TRAV19A0A0A6YYK7 116 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 GOLGA8IPA6NC78 632 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 GOLGA8JA6NMD2 632 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 K7EQS6 105 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 CDX4O14627 284 aaPredicted RBP20.59■□□□□ 0.89
NUP88-203ENST00000572019 SCAMP3O14828 347 aaKnown RBP20.59■□□□□ 0.89
NUP88-203ENST00000572019 CKMP06732 381 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 CHRM1P11229 460 aaPredicted RBP20.59■□□□□ 0.89
NUP88-203ENST00000572019 IFNAR2P48551 515 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 FOXC1Q12948 553 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 C2orf27AQ580R0 203 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 SH3PXD2AQ5TCZ1 1133 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 PMS2CLQ68D20 193 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 BRSK2Q8IWQ3 736 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 USP33Q8TEY7 942 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 ABCB6Q9NP58 842 aa20.59■□□□□ 0.89
NUP88-203ENST00000572019 PTPRJQ12913 1337 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 MYMKA6NI61 221 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 SOBPA7XYQ1 873 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 H3BQV1 296 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 RHOBTB1O94844 696 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 IL18RAPO95256 599 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 USP17L7P0C7H9 530 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 HOXB3P14651 431 aaPredicted RBP20.58■□□□□ 0.89
NUP88-203ENST00000572019 USP46P62068 366 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 AMPD2Q01433 879 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 ZNF252P-AS1Q0IIN9 211 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 LMBRD2Q68DH5 695 aaPredicted RBP20.58■□□□□ 0.89
NUP88-203ENST00000572019 ANO7Q6IWH7 933 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 SCN4BQ8IWT1 228 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 CCDC33Q8N5R6 958 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 FRMD1Q8N878 549 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 MDGA1Q8NFP4 955 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 TSTD1Q8NFU3 115 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 RASSF8Q8NHQ8 419 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 ATP2A3Q93084 1043 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 TMEM206Q9H813 350 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 ZMIZ1Q9ULJ6 1067 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 SNX9Q9Y5X1 595 aa20.58■□□□□ 0.89
NUP88-203ENST00000572019 PLXND1Q9Y4D7 1925 aa20.58■□□□□ 0.88
NUP88-203ENST00000572019 WDFY3Q8IZQ1 3526 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 GABRDO14764 452 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 NEFLP07196 543 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 LMO2P25791 158 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 DDIT3P35638 169 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 PSMC1P62191 440 aaKnown RBP20.57■□□□□ 0.88
NUP88-203ENST00000572019 RPL10AP62906 217 aaKnown RBP20.57■□□□□ 0.88
NUP88-203ENST00000572019 IRX4P78413 519 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 POU5F1Q01860 360 aaKnown RBP20.57■□□□□ 0.88
NUP88-203ENST00000572019 SF3A1Q15459 793 aaKnown RBP20.57■□□□□ 0.88
NUP88-203ENST00000572019 SOWAHAQ2M3V2 549 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 C8orf34Q49A92 452 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 UNQ6494/PRO21346Q6UXR6 183 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 TMEM92Q6UXU6 159 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 RASSF3Q86WH2 238 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 ADGRF2Q8IZF7 708 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 CSGALNACT2Q8N6G5 542 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 ACDQ96AP0 544 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 DNAJC19Q96DA6 116 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 CBWD1Q9BRT8 395 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 MTMR12Q9C0I1 747 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 PDE11AQ9HCR9 933 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 ZDHHC4Q9NPG8 344 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 BAHCC1Q9P281 2608 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 UXTQ9UBK9 157 aaPredicted RBP20.57■□□□□ 0.88
NUP88-203ENST00000572019 NME7Q9Y5B8 376 aa20.57■□□□□ 0.88
NUP88-203ENST00000572019 HUS1O60921 280 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 LONP1P36776 959 aaKnown RBP20.56■□□□□ 0.88
NUP88-203ENST00000572019 PNPLA4P41247 253 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 CFAP221Q4G0U5 840 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 FAM171BQ6P995 826 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 NT5DC4Q86YG4 428 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 SPATA2LQ8IUW3 424 aaPredicted RBP20.56■□□□□ 0.88
NUP88-203ENST00000572019 KRI1Q8N9T8 703 aaKnown RBP20.56■□□□□ 0.88
NUP88-203ENST00000572019 KBTBD7Q8WVZ9 684 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 RLN3Q8WXF3 142 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 CRTAC1Q9NQ79 661 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 GDAP2Q9NXN4 497 aa20.56■□□□□ 0.88
NUP88-203ENST00000572019 RBAKQ9NYW8 714 aaPredicted RBP20.56■□□□□ 0.88
NUP88-203ENST00000572019 KRT19P08727 400 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 HDCP19113 662 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 SLC6A11P48066 632 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 MYL7Q01449 175 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 L1TD1Q5T7N2 865 aaKnown RBP20.55■□□□□ 0.88
NUP88-203ENST00000572019 C12orf40Q86WS4 652 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 LRRC52Q8N7C0 313 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 MYLPFQ96A32 169 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 HVCN1Q96D96 273 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 RNF38Q9H0F5 515 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 PCIF1Q9H4Z3 704 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 MRPL44Q9H9J2 332 aaKnown RBP20.55■□□□□ 0.88
NUP88-203ENST00000572019 ARHGAP26Q9UNA1 814 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 KIF3AQ9Y496 699 aa20.55■□□□□ 0.88
NUP88-203ENST00000572019 LEFTY2O00292 366 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 EIF5BO60841 1220 aaKnown RBP20.54■□□□□ 0.88
NUP88-203ENST00000572019 CYP17A1P05093 508 aa20.54■□□□□ 0.88
NUP88-203ENST00000572019 KCNB1Q14721 858 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms