RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 ANKRD22Q5VYY1 191 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 OR6B2Q6IFH4 312 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 TBC1D1Q86TI0 1168 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 PNMA8AQ86V59 439 aaPredicted RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 ARFGAP1Q8N6T3 406 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 FAM71DQ8N9W8 422 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C3orf20Q8ND61 904 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SPOCK2Q92563 424 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CENPTQ96BT3 561 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 APOL6Q9BWW8 343 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 NSRP1Q9H0G5 558 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C2orf40Q9H1Z8 148 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 C12orf65Q9H3J6 166 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 SMARCAD1Q9H4L7 1026 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 GPATCH2LQ9NWQ4 482 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CNTN6Q9UQ52 1028 aa9.2□□□□□ -0.94
LINC00558-201ENST00000569422 MYH9P35579 1960 aaKnown RBP9.2□□□□□ -0.94
LINC00558-201ENST00000569422 CDH16O75309 829 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ATP5DP30049 168 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CTCFP49711 727 aaPredicted RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 RAD23BP54727 409 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 YWHAEP62258 255 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 MBTD1Q05BQ5 628 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 TTLL4Q14679 1199 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 PKN2Q16513 984 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 GLRA4Q5JXX5 417 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 YTHDF3Q7Z739 585 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ERO1BQ86YB8 467 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ALLCQ8N6M5 410 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 BBOF1Q8ND07 529 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 AFG1LQ8WV93 481 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CCT6BQ92526 530 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 PIWIL1Q96J94 861 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 LPIN3Q9BQK8 851 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ADPGKQ9BRR6 497 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ELOVL4Q9GZR5 314 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 FAM49AQ9H0Q0 323 aaPredicted RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CXCL16Q9H2A7 254 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 FAM49BQ9NUQ9 324 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 PPP2R3BQ9Y5P8 575 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 LOXHD1Q8IVV2 1947 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 A0A0G2JLL6 359 aaPredicted RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 TIMM44O43615 452 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 MICAL2O94851 1124 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CPP00450 1065 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 NEFHP12036 1026 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 EIF4BP23588 611 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ADCYAP1R1P41586 468 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 AP3M2P53677 418 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 VCPP55072 806 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 LMNB2Q03252 620 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 HADHQ16836 314 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CDCA2Q69YH5 1023 aaPredicted RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 MFSD5Q6N075 450 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 C1orf228Q6PIY5 440 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ARMC9Q7Z3E5 817 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 PRRT2Q7Z6L0 340 aaPredicted RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 CEP57Q86XR8 500 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 UNC45BQ8IWX7 931 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ZCCHC9Q8N567 271 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 UBR7Q8N806 425 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 C7orf31Q8N865 590 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 TMEM109Q9BVC6 243 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ALG13Q9NP73 1137 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 ADARB2Q9NS39 739 aaKnown RBP9.19□□□□□ -0.94
LINC00558-201ENST00000569422 KLC4Q9NSK0 619 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 HES2Q9Y543 173 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 LTBP3Q9NS15 1303 aa9.19□□□□□ -0.94
LINC00558-201ENST00000569422 A0A1W2PPM1 405 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 TCRBV7S3A2A0A539 114 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CARNS1A5YM72 827 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 F5H423 210 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 HBP1O60381 514 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 RNF8O76064 485 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 LSM8O95777 96 aaKnown RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 VDRP11473 427 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MIPP30301 263 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 PTPN11Q06124 597 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 DNAJC3Q13217 504 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 FAXCQ5TGI0 409 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MAP1SQ66K74 1059 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 ARMCX2Q7L311 632 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 TRPM8Q7Z2W7 1104 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 KIF2BQ8N4N8 673 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 KLHL23Q8NBE8 558 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SLC4A11Q8NBS3 891 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 HPDLQ96IR7 371 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 CFAP57Q96MR6 1250 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MAK16Q9BXY0 300 aaKnown RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MIS12Q9H081 205 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 FZD8Q9H461 694 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 IFT122Q9HBG6 1241 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 NGRNQ9NPE2 291 aaKnown RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 HEY1Q9Y5J3 304 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 SRRM3A6NNA2 597 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 ASAP2O43150 1006 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 MED7O43513 233 aa9.18□□□□□ -0.94
LINC00558-201ENST00000569422 ARF4P18085 180 aaPredicted RBP9.18□□□□□ -0.94
LINC00558-201ENST00000569422 NDST1P52848 882 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms