RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CACNB3P54284 484 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 UBE2SQ16763 222 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 EDRF1Q3B7T1 1238 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 TMEM119Q4V9L6 283 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 CNNM4Q6P4Q7 775 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 UNC13DQ70J99 1090 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 TAS2R42Q7RTR8 314 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ARPINQ7Z6K5 226 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 REXO1Q8N1G1 1221 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 C7orf43Q8WVR3 580 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 HDAC2Q92769 488 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 PGM2Q96G03 612 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 CIB1Q99828 191 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 HAUS8Q9BT25 410 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 WNT8AQ9H1J5 351 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 CAPN11Q9UMQ6 739 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 EPHB6O15197 1021 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 B4GALT4O60513 344 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 PLCB3Q01970 1234 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 NIPAL4Q0D2K0 466 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 MEA1Q16626 185 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 NIPAL1Q6NVV3 410 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 DYMQ7RTS9 669 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ZBTB46Q86UZ6 589 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 MMAAQ8IVH4 418 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 LZTR1Q8N653 840 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 PTCD2Q8WV60 388 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 SLC7A3Q8WY07 619 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 OTUD5Q96G74 571 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 FAM161BQ96MY7 647 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 STMN4Q9H169 189 aaPredicted RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 ZNF287Q9HBT7 754 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 RIC8AQ9NPQ8 531 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ZFP69BQ9UJL9 534 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 RGPD3A6NKT7 1758 aaPredicted RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 RGPD4Q7Z3J3 1758 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 RSPH10B2B2RC85 870 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 USP17L10C9JJH3 530 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 TTLL1O95922 423 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 RSPH10BP0C881 870 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 VCLP18206 1134 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 SLC1A1P43005 524 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 PHKA2P46019 1235 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 POLD2P49005 469 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ASPRV1Q53RT3 343 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 CENPPQ6IPU0 288 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 IYDQ6PHW0 289 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 POTEHQ6S545 545 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 RALGPS2Q86X27 583 aaPredicted RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 ELMOD1Q8N336 334 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 APPL2Q8NEU8 664 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 HCAR2Q8TDS4 363 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ZDHHC15Q96MV8 337 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 CELF4Q9BZC1 486 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 SLC38A7Q9NVC3 462 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 USP40Q9NVE5 1235 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 ATP11BQ9Y2G3 1177 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 MYOCOSA0A1B0GUC4 107 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 SYCE1LA8MT33 242 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 FOXO6A8MYZ6 492 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 GOLGA8MH3BSY2 632 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PALMO75781 387 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 NPR1P16066 1061 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 ZNF12P17014 697 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 KRT81Q14533 505 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 DACT2Q5SW24 774 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 CGB2Q6NT52 195 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 RAPH1Q70E73 1250 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 USP38Q8NB14 1042 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 BBOF1Q8ND07 529 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PSD4Q8NDX1 1056 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 EFHD2Q96C19 240 aaPredicted RBP11.31□□□□□ -0.6
CLK3-226ENST00000569406 DNAJC19Q96DA6 116 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 VPS35Q96QK1 796 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 C6orf50Q9HD87 102 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 SEPT11Q9NVA2 429 aaKnown RBP11.31□□□□□ -0.6
CLK3-226ENST00000569406 APPL1Q9UKG1 709 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PCDHA2Q9Y5H9 948 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 A0A0B4J203 849 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 A0A1W2PQC6 194 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 RASGRF2O14827 1237 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PPP2R2BQ00005 443 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 GNA13Q14344 377 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 FIP1L1Q6UN15 594 aaKnown RBP11.31□□□□□ -0.6
CLK3-226ENST00000569406 ELMOD2Q8IZ81 293 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 CHCHD4Q8N4Q1 142 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 RABGEF1Q9UJ41 708 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PNMA6FA0A0J9YX94 578 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 CCDC22O60826 627 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 CCNCP24863 283 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 SPIRE1Q08AE8 756 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 TATDN1Q6P1N9 297 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 KCTD1Q719H9 257 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 RRAGAQ7L523 313 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 DGLUCYQ7Z3D6 616 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 VTI1AQ96AJ9 217 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 PGBD4Q96DM1 585 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 CCDC138Q96M89 665 aa11.31□□□□□ -0.6
CLK3-226ENST00000569406 AGO2Q9UKV8 859 aaKnown RBP11.31□□□□□ -0.6
CLK3-226ENST00000569406 PLSCR1O15162 318 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms