RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 R3HCC1Q9Y3T6 440 aaKnown RBP15.99■□□□□ 0.15
CLN3-236ENST00000568558 TRAV19A0A0A6YYK7 116 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 STX6O43752 255 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 FOXD2O60548 495 aaPredicted RBP15.98■□□□□ 0.15
CLN3-236ENST00000568558 ATP2C2O75185 946 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 LMO2P25791 158 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 HOXD13P35453 343 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 GALK1P51570 392 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 PSMC1P62191 440 aaKnown RBP15.98■□□□□ 0.15
CLN3-236ENST00000568558 STK38Q15208 465 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 E2F4Q16254 413 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 DUOXA2Q1HG44 320 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 NAIF1Q69YI7 327 aaPredicted RBP15.98■□□□□ 0.15
CLN3-236ENST00000568558 FSIP1Q8NA03 581 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 LINC00301Q8NCQ3 95 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 OSCP1Q8WVF1 389 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 NUP205Q92621 2012 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 MYLPFQ96A32 169 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 P2RY13Q9BPV8 354 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 LRRC27Q9C0I9 530 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 CRTAC1Q9NQ79 661 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 KBTBD4Q9NVX7 518 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 DUS2Q9NX74 493 aaKnown RBP15.98■□□□□ 0.15
CLN3-236ENST00000568558 HSPBP1Q9NZL4 362 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 CDH9Q9ULB4 789 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 SLC8A2Q9UPR5 921 aa15.98■□□□□ 0.15
CLN3-236ENST00000568558 TPRP12270 2363 aaKnown RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 EIF3DO15371 548 aaKnown RBP eCLIP15.97■□□□□ 0.15
CLN3-236ENST00000568558 GDF9O60383 454 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 RPP40O75818 363 aaKnown RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 WARSP23381 471 aaKnown RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 IFNAR2P48551 515 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 EML3Q32P44 896 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 FBXO43Q4G163 708 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 VSTM1Q6UX27 236 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 CACNA2D4Q7Z3S7 1137 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 WDR49Q8IV35 697 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 CAMKK1Q8N5S9 505 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 ARL14EPQ8N8R7 260 aaPredicted RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 EZH1Q92800 747 aaPredicted RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 ATP2A3Q93084 1043 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 EXOC4Q96A65 974 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 LOXL4Q96JB6 756 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 SPATA17Q96L03 361 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 TRIM9Q9C026 710 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 CUEDC2Q9H467 287 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 KIAA1586Q9HCI6 787 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 FOXD4L1Q9NU39 408 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 POLR3BQ9NW08 1133 aaPredicted RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 MAGEC2Q9UBF1 373 aaPredicted RBP15.97■□□□□ 0.15
CLN3-236ENST00000568558 WNT6Q9Y6F9 365 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 MYOFQ9NZM1 2061 aa15.97■□□□□ 0.15
CLN3-236ENST00000568558 C2orf78A6NCI8 922 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 PPP6R2O75170 966 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 AKAP3O75969 853 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 EPN2O95208 641 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 ADRB1P08588 477 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 CCDC192P0DO97 292 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 TCF3P15923 654 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 BDNFP23560 247 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 RAP1GAPP47736 663 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 KCNB1Q14721 858 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 MAPRE1Q15691 268 aaKnown RBP15.96■□□□□ 0.15
CLN3-236ENST00000568558 EPM2AIP1Q7L775 607 aaPredicted RBP15.96■□□□□ 0.15
CLN3-236ENST00000568558 KBTBD6Q86V97 674 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 TTC16Q8NEE8 873 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 ZNF507Q8TCN5 953 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 CD101Q93033 1021 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 CEP295NLQ96MC4 621 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 CNTNAP3BQ96NU0 1288 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 CNTNAP3Q9BZ76 1288 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 ARRDC1-AS1Q9H2J1 176 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 ARHGAP26Q9UNA1 814 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 ACACBO00763 2458 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 MYH10P35580 1976 aa15.96■□□□□ 0.15
CLN3-236ENST00000568558 THADAQ6YHU6 1953 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 KMT2BQ9UMN6 2715 aaPredicted RBP15.95■□□□□ 0.14
CLN3-236ENST00000568558 K7ELQ4 463 aaPredicted RBP15.95■□□□□ 0.14
CLN3-236ENST00000568558 AXIN1O15169 862 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 SPTLC2O15270 562 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 PDGFRBP09619 1106 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 HDCP19113 662 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 USP46P62068 366 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 ASIC1P78348 528 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 CYP27A1Q02318 531 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 SNRNP35Q16560 246 aaKnown RBP15.95■□□□□ 0.14
CLN3-236ENST00000568558 PPM1JQ5JR12 505 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 FAM26FQ5R3K3 315 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 CNNM4Q6P4Q7 775 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 DENND5BQ6ZUT9 1274 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 SYT13Q7L8C5 426 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 TRAPPC11Q7Z392 1133 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 RPLP0P6Q8NHW5 317 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 SH3RF2Q8TEC5 729 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 PCED1BQ96HM7 432 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 HHIPQ96QV1 700 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 AGPAT3Q9NRZ7 376 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 NME7Q9Y5B8 376 aa15.95■□□□□ 0.14
CLN3-236ENST00000568558 CNOT1A5YKK6 2376 aaKnown RBP15.95■□□□□ 0.14
CLN3-236ENST00000568558 EPG5Q9HCE0 2579 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms